Xenopus tropicalis (tropical clawed frog): 493493
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Entry
493493 CDS
T01011
Symbol
ercc2
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03022
Basal transcription factors
xtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
493493 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
493493 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
493493 (ercc2)
03036 Chromosome and associated proteins [BR:
xtr03036
]
493493 (ercc2)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
493493 (ercc2)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
493493 (ercc2)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
493493 (ercc2)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
493493 (ercc2)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
493493 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
SesA
SNF2-rel_dom
PspAA
Motif
Other DBs
NCBI-GeneID:
493493
NCBI-ProteinID:
NP_001008131
Xenbase:
XB-GENE-949792
UniProt:
Q66II2
LinkDB
All DBs
Position
8:70776222..70789626
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYEYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYQ
RAYPLEVTKLIYCSRTVPEIEKVVEELRKLIEYTQAQTGGTLNFMALALSSRRNLCVNPE
VSALRFGKEIDGRCHSLTASFVRSQKQRDPTVQTCRFFEEFDAIGRETPLPPGIYNLDDL
RTLGRQKGWCPYYLARHALGQCNVVVYSYHYLLDPKIADLVSRELSKKSVVVFDEAHNID
NVCIDSMSVTITRRTLERCQTNIETLNTAIEKIKETDEKKLKEEYAQLVEGLREASVARE
TDVYLSNPVLPDEILQEAVPGCIRNALHFLGFLRRLVGYIKSRLRAGHVTQEGPAAFLRD
LYEKVCIERKPMRFCAERLRSLTRTLEIADITDLSPLTLITNFATLVSTYTKGFMIIIEP
FEDRTPSISNPVLHFSCLDSSLAIKPVFQRFQSVIITSGTLSPLDIYPKILDFRPVTMAT
FTMTLARVCLCPMVVGRGNDQVAMSSKFETREDLAVMRNYGNLLLEMSAVVPDGIVGFFT
SYLYMENIVASWYEQGILENIQRNKLIFIETQDGAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLQFLRDQFHLRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMLFADKRYARSDKRGKLPLWIQEHLTDANLNLTLDESVHLARHF
LRQMAQPFRREDQLGLSLLTLEQLQSEEMLQKIQEIAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatagatgggttactggtatactttccctatgagtacatctatcccgaa
cagtactcctacatgttggagctcaagaggaccctggatgccaaaggtcacggtgttctg
gagatgccgtctgggactgggaaaacagtttctctcctgtcgcttattgtggcctaccaa
agggcttacccgttggaagtcactaagttaatatactgctccagaactgttcctgaaata
gagaaggtggtggaggagttaagaaagctaattgaatacactcaagcacagactggaggc
acactcaattttatggctttggctctgagctccagacgtaatctttgtgttaatccagag
gtcagtgctttgcgatttggcaaagagatagatggtcgttgtcacagtttgacagcttcc
tttgtccgttcccagaagcagagagacccaactgtacaaacctgtcgtttttttgaggaa
tttgatgcaattggacgtgagaccccccttcctcctggtatctacaatctggatgacctt
aggactttgggtagacaaaaaggctggtgtccttattaccttgcccgacatgctctcgga
cagtgcaatgtggttgtgtacagctatcactacttactggatcccaaaatagctgacctt
gtctctcgtgaactttccaagaaatctgttgttgtctttgatgaagctcataatattgat
aatgtctgcattgactctatgagtgtcaccatcacacgcagaaccctggagcgctgtcag
acaaacattgaaactctcaacacggcaatagaaaaaataaaagaaacagatgaaaagaag
ctgaaggaggagtacgctcaactggtggagggattgcgggaggccagtgttgcaagggag
actgatgtgtacctgtccaaccctgtcttacctgatgaaattctgcaagaggctgtgcca
ggctgcatccgtaatgctctccacttcctgggttttttacgacgattagtgggctacatc
aaatcacgtctacgtgcaggccatgtaacacaagagggccctgctgcctttcttcgtgac
ctttatgagaaagtctgcatcgaaaggaagccaatgcggttctgtgcagaacggttgcgt
tccctcacacgcactcttgagatagctgacattacagacctctctcctcttaccctcata
accaactttgctacccttgtcagcacatatactaaaggttttatgataattattgaacca
ttcgaggacagaacaccatctataagtaatcctgtgctgcacttcagctgtctagattct
tcccttgcaattaaacctgtattccagagatttcagtctgtcatcatcacgtctgggacc
ctctctcctttggatatctaccccaaaattttggattttcgccctgttactatggcaaca
ttcacaatgaccttggcccgtgtttgtctttgtcctatggtcgtgggccgtgggaatgat
caagtggcaatgagttcaaagtttgaaacaagggaagatctagctgtgatgaggaattat
gggaaccttttgcttgaaatgtctgctgtggtcccagatggaatagtaggattttttacc
agttacctatacatggagaacattgtggcttcatggtatgagcagggaatattggaaaac
attcagaggaacaaattgatcttcattgaaacacaagatggagcagagactagtgttgcc
ttagaaaaatatcaagaggcttgtgaaaatggaaggggagctatcctgttatctgttgca
cgaggaaaagtatcagagggcattgattttgtgcatcactatggccgagctgtaataatg
tttggtgttccatatgtatatacacagagccgtatactgaaggctcgtctgcagttcctg
cgggatcagttccatttgcgtgagaatgattttctgacatttgatgctatgaggcatgca
gctcagtgtgtaggacgtgctatccgtggtaaaactgactatggaataatgctgtttgct
gacaagcggtatgcacgttctgataagagaggaaagctgccactctggattcaagaacac
cttacagatgcaaacttaaatcttacactggatgaaagtgtacatctagcccgacacttc
ctaagacaaatggctcaaccattccgcagggaggaccagctgggactgtcacttcttaca
cttgagcaattgcagtctgaagagatgctacagaagatacaagagattgctcatcaggtg
tga
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