Xenopus tropicalis (tropical clawed frog): 496415
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Entry
496415 CDS
T01011
Symbol
lum
Name
(RefSeq) lumican precursor
KO
K08122
lumican
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xtr00535
]
496415 (lum)
Proteoglycans [BR:
xtr00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
496415 (lum)
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_9
LRRNT
LRR_5
LRR_14
Motif
Other DBs
NCBI-GeneID:
496415
NCBI-ProteinID:
NP_001011006
Xenbase:
XB-GENE-1004934
UniProt:
Q640B1
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Position
3:complement(55465084..55474877)
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AA seq
353 aa
AA seq
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MHLHFIPFFAVLISGVLCTFYDYGYDGGYAGPEGDYYVSSLSLGPSTANCAPECTCPFNY
PSAMYCDNRKLKVIPMVPAGIQYLYLQSNMIEAIEEDAFKNVTELKWLILDHNQLTNGKI
KKNAFSSLKHLVKLYISFNNLTELVGPLPKTMDDLRVTNNKISKITPNILEGLENLTHIH
LQYNALKEDSISGAFKGLKQLEYLDLSFNELTKLPKGLPPSITTLYFDNNKIANIPDEFF
QGFKALQYLRLSNNKLKDGGVPGNAFNISSLVELDLSFNELGSIPAVNEGLENLYLQVNK
IQKFNLNSFCKIIGPLEYSKIRHLRLDGNNISRVDLPQDMYSCLRVASEIDLG
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttcattttattcccttctttgcagtgctaataagtggtgtcttatgtacattt
tatgactatggttatgatggaggatatgctgggccagagggagattactatgtctcaagt
ttatctttgggaccatctactgcaaactgtgctccagaatgcacctgtcctttcaactat
ccctctgcaatgtattgtgacaaccgcaaattaaaggtaatcccaatggttcctgctgga
atacaatatttgtacctgcaaagcaacatgattgaggctatagaagaggatgcttttaag
aatgttactgaattgaaatggcttattctagaccacaaccagctgaccaatggcaaaatc
aagaaaaatgctttttccagtctaaaacacctagtcaagttatatatcagctttaacaac
cttactgaacttgtagggccactaccaaaaaccatggatgaccttcgtgtaaccaacaat
aaaatatcaaagattactcctaacattttggaaggtctagagaatttaactcacattcac
ctgcagtacaatgctctaaaagaagattccatttcaggggcatttaaaggtctaaaacaa
cttgaatatcttgaccttagttttaatgaactgacaaagctacccaagggacttcctcca
agcataactactttatattttgacaacaataaaattgctaatatcccagatgagtttttc
caaggttttaaagctctgcaatatcttcgcctgtccaacaacaaattgaaggatggaggt
gtacctggaaatgctttcaacatctcaagtcttgttgagttggatctttcattcaatgaa
cttgggagcattccagctgtgaatgaaggtctagaaaacctctacttgcaagtcaacaaa
attcaaaaattcaatctgaacagcttctgtaaaattattggaccactggaatactccaaa
attagacaccttcgtttagatggaaacaatatcagcagagttgacctaccccaggacatg
tacagctgtctccgtgtggccagtgaaatagacctaggttaa
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