Xenopus tropicalis (tropical clawed frog): 496442
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Entry
496442 CDS
T01011
Symbol
abca4
Name
(RefSeq) retinal-specific ATP-binding cassette transporter
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
496442 (abca4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xtr02000
]
496442 (abca4)
Transporters [BR:
xtr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
496442 (abca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
496442
NCBI-ProteinID:
NP_001011033
Xenbase:
XB-GENE-1000810
UniProt:
Q5YG24
LinkDB
All DBs
Position
4:103655260..103778282
Genome browser
AA seq
2359 aa
AA seq
DB search
MRFSAKVKLLLWKNWTLRKRQKLRIFVELVWPLSLFFILVWLRNANPLYGQHECHFPNKA
MPSAGLLPWLHGIFCNTNNPCFKSPTRGESPGVVSNYNNSILARAYSNAQEVLLEKPEIR
HLSRMWKELYTMSNLMDTLRTNPGKVSGRGIRVKDILKDDETLTLFLLRDIGLSDSVVYQ
LINAQIRIEQFAFGVPDLTLKDIACSQTLLDRFIIFSSRRGMQTVRNSMCVLSQQRLQRI
EDVLYASIDFFKLFEILPTVIDYSSRGIDLRFWGKVMSNLSESLKELVQKPSIQDLLWVL
RPLVQDGGPTTFTQLINSLSDLFCGYPEGGGARVFSFNWYEDNNYKVFLGVNSTKKETYY
LYDKTTTPFCNALIQSMESNPATKIAWSAMKPLLMGKVLYSPDSPAVREILKKANSTFEQ
LERVRQMGKAWEEVGPQLWNFFHSSVQMNLVRDTIKNPTVKEFLTRQLGDEGLTADDVIN
FLYNGNQDERPEGQVNYDWRNIFNITDHAIRLFNQYMGCLTLDKFEGHDDESHLTHHALY
LLEENKFWAGLVFLDMFPWTNTLPSHVKYKIRMDIDAVEKTNKIKDRYWDPGPRADPVED
MRYIWGGFAYLQDMIDHGIIKSQTSTEVPAGIYLQQMPYPCFVDDVFMITLNRCFPIFMV
LAWIYSISMLVKDIVLEKELRLKETMKNMGVTNDVIWLTRFIDSFTVMTTSTILLTVVIV
VGGVLHYSNPIILFCFLMAFTIATIMQAFLMSVFFSKANLAAACSGVIYFTLYLPHILCF
AWQDRMTIKLKTLASFLSPVAFGFGTEYLSRYEEQGLGLQWGNIRKSPMEGDEYSFLFSI
FMMLLDAFIYWTLAWYIDHVFPGEYGIPKPWYFPFLATYWCKFEHEFGGDADSIETELSI
HEHIEENHIEPTDNQPEALPDGVKEEAEKSVKQDDIIVNKDSSACKHKVKKEKEQEEKQR
KDEQEKERNDKDDMKDGFTYIGNPFFEPEPPGMVPGVYIQDLVKVYENTYKPAVDRMNIT
FYEGQITAFLGHNGAGKTTTLSIITGLFPPTSGTVWVRGRDIQTHMDSIRQSLGMCPQHN
ILFRHLTVEEHILFYAQLKGKSRKQAERQAEVMLEDMGIPHKRNDEAQNLSGGMQRKLSV
ALAFVGESKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIILSTHHMDEADLLGDRIAI
VSQGKLFCSGSPLFLKNCFGTGFYLTLVRRMRNIKDTGKKDSASCQSDCSCPCSSCTPKV
KENLLEQELDGDVSGLTELIHHHVPEAKLLESIGQELIYLLPSKDFKFRAYASLFRELEE
TLGDLGLSSFGISDTPLEEIFLKVTADSVTGTETPEEWMLQQRKSRTSLGVDNQTTVINI
DNKGQESSIRKDSHHCKAEKNPPNINDREADGRGSRQIKGTELLQQQFNALIIKRFKHAT
RSHKDFFAQIVLPASFVLLALVFTLIVPPFGEYPSLTLHPWIYGQQFVFFSNEQPGNEQM
ATFSNAFLNSPGLGTRCMKDQPLSKKYQCTNTSNEWTMPAVSPSVTNMLLSQEWTRDNPS
PSCTCSSRSKLMMLPECPEGAGGRPPPQRIQPSSEIIQDLTERNISDFLLKTYPDLIRSS
MKSKYWVNEQRYGGISVGGKLPVLHVKGGDIVSFFSQVGQMTNVTAGTTTKAISQELQTF
LQNLETEDNIKVWFNNKGWHSMVIFINVANNAILRANLGADKDPEEFGITTMNHPLNLTK
DQLSEVTVLTTSVDVVVAICVIFAMSFIPASFVLYLIQERVSNAKHLQFVSGVTPAIYWL
TNFAWDIINYAISVAMVVIIFIAFDKKAYTSSSNLPALIALLFFYGWAVIPMMYPASYLF
NVPSTAYVALSCINLFIGINSSAITFILDLFENNRSLLKFNEKLKDLLLIFPHFCLGRGL
IDLAMNQAVTDVYARFGEEHVSNPFQWEFLGRNIFAMAVEGVVYFTLNLLIQHRFFFSTW
FSEPPKGLVEGEDEDVAQERQRVIKGGGKNDILKLKELTKTYPGKQSPAVDRLCVGVRPG
ECFGLLGVNGAGKTTTFKMLTGDIQVTSGDASVAGYSILQDIADVHQNSGYCPQFDAIDD
LLTGREHLQLYGRLRGVPEDEIDMVADWGIEKLGLGKYADNLTGTYSGGNKRKLSTAIAL
IGCPPVVLLDEPTTGMDPQSRRFLWNSIVSIIKEGRAVVLTSHSMEECEVLCTRLAIMVK
GTFKCLGTIQHLKYKFGDGYIVTMKVRASKPGLAPDPGPVEKFIQTNFPGSVQREKHYNM
LQYQLSSSSLARVFQLLISNKDSLNIEEYSVSQTTLDQVFVNFAKQQTEDEDIHLHPRAA
GATRDMKVAPAPPPKTPAQ
NT seq
7080 nt
NT seq
+upstream
nt +downstream
nt
atgcgattcagtgccaaagttaagcttttgctgtggaagaactggacactacgaaaaaga
caaaagctccgtattttcgtggaacttgtatggccactgtcattgttcttcatcttggtg
tggctaaggaatgctaatcctctgtatggccaacatgaatgccattttccaaacaaggct
atgccgtcggcagggttgttgccatggttacatggaattttctgcaataccaataatcct
tgtttcaaaagtcctacacggggagagtctcctggcgtcgtttcaaactacaacaattcc
atccttgctcgggcctatagcaatgcccaagaagttcttctggaaaagccagagatccgt
cacttgagtagaatgtggaaagaactttatacaatgtcgaacttgatggataccctaagg
accaaccctggaaaagtttcgggacgtgggatacgagtcaaagatatcctaaaggatgat
gagactctgactttgtttttgttaagagatattggtctttccgattctgtggtctatcag
ctcattaatgcacaaatccgcattgaacagtttgctttcggggtgccagatctgactttg
aaggatatagcctgtagccagactctcttggatcggttcatcattttcagtagtcgcaga
ggaatgcaaactgtacgcaactccatgtgtgtcctatcccaacagaggctgcaaagaata
gaagatgttttgtatgcaagcattgatttcttcaaactatttgaaattcttccaactgtg
atagactatagctcacgtggtatagatctccgcttctggggaaaagttatgtccaatttg
tctgaatctctgaaagaattagtccagaagccaagtatccaggatctactttgggtgctt
aggccacttgtgcaagatggaggacctacgaccttcactcagctcattaactctttatca
gacttgttctgtgggtatcctgagggaggaggagccagagttttctctttcaattggtat
gaagataataactacaaagtgttcctgggtgtaaactctacaaagaaagaaacctactac
ctctatgacaagaccaccacgccattttgcaatgccctgattcagagtatggagtctaac
cctgcaacaaaaatagcttggagtgcaatgaagcctcttctaatgggcaaggtcctttac
tcccctgattcgcctgcagtaagggagatcctgaaaaaggccaactcaacctttgagcaa
ctggagcgtgtcaggcaaatgggaaaagcctgggaagaggtggggccgcagctttggaac
ttctttcacagcagtgttcaaatgaacctggtgcgggacaccatcaaaaatcccacagtg
aaggaattcctcaccagacagctgggtgatgaggggttaacagctgatgacgtaatcaat
tttctttacaatggaaatcaagatgagcggcctgaagggcaagtgaattatgactggaga
aacatctttaatatcaccgatcatgctatacgcctatttaatcaatacatggggtgtttg
acattggataaatttgaaggtcatgacgatgaatcccatttgacacaccatgcactttac
ttgttggaagaaaataaattctgggctggtctggtgtttctagatatgtttccatggacc
aacacgttaccatcccatgtgaaatataagatacggatggatattgatgcagtggagaaa
acaaacaagatcaaagacagatactgggatccaggaccaagagcagatccagttgaagat
atgaggtacatctggggaggctttgcttatcttcaggatatgatcgaccatggcattata
aaaagccagacaagcactgaagtaccagcaggaatctacttacaacagatgccgtaccca
tgcttcgtagatgatgtatttatgattacacttaatcgctgcttcccgattttcatggtc
cttgcgtggatctattcaatttctatgctggtgaaggacattgttctagaaaaagagtta
cgattgaaagagaccatgaagaatatgggtgtaacaaatgatgtcatctggttaacgcgg
ttcattgatagctttactgtcatgacaaccagcaccatccttcttactgttgttattgtg
gttggtggggtcctacactacagtaacccgataatcctattttgtttcttgatggccttc
acaatagcaactatcatgcaagccttcctgatgagcgtctttttctctaaagccaatcta
gcagctgcctgcagcggagttatttacttcacactctatttaccgcacatcctctgcttt
gcttggcaggaccgcatgaccatcaagctgaaaaccttggcaagttttctgtctcctgta
gcctttgggtttggaacagagtatttatctagatatgaagaacaaggtcttgggctacag
tggggcaacattagaaagagccccatggaaggagatgaatacagcttcctgttttcaatt
tttatgatgcttttagatgcctttatttattggactctagcttggtacattgatcatgtt
tttccaggggaatatggaatcccaaaaccatggtatttcccatttttggcaacctattgg
tgcaaatttgaacatgaatttggaggggatgctgattcaatagagactgagctgtcgatt
catgagcacattgaagagaatcacatagaaccaacagataatcaacctgaagccctccct
gatggtgtgaaagaagaagcagaaaaatcagtgaaacaggacgatataatagttaacaaa
gattcttctgcttgcaaacacaaggttaagaaagaaaaggagcaggaagagaagcaaagg
aaagatgaacaggaaaaagagaggaatgacaaagatgatatgaaagatggttttacctat
ataggtaatccattttttgaacctgagccaccgggtatggttccaggagtctatattcag
gacttggtgaaagtgtatgaaaatacatacaagcctgctgtggacagaatgaacatcaca
ttttatgaagggcagataactgctttccttggtcacaatggtgctggaaaaacaacaacc
ttatcaatcataactggcttgttcccaccaacatcaggaacagtatgggtacgtggtaga
gatattcagacacacatggattcaatccgacaaagtcttggaatgtgcccacagcacaac
atcctttttcgccacttgacagtggaagagcacattctcttctatgctcaactgaaaggc
aaatctagaaagcaggctgaaaggcaagcagaggttatgttggaagacatgggtatcccc
cataaaagaaatgatgaggcacaaaacctatctggtggaatgcaaagaaaattgtctgta
gctttggcatttgttggtgaatcaaaagttgtggtcttggatgaacccacttcaggtgta
gacccatactccagaaggtcaatatgggatttgctgctcaaatatcgctcaggaagaaca
attatcctttcaacgcatcacatggatgaggcagatctacttggagacagaatagctatc
gtatcccaaggaaaactcttttgcagtggctccccgttattcctaaagaactgttttggc
acaggcttctaccttactctggttcgtaggatgagaaatatcaaagacactggaaagaaa
gattctgcttcctgccagtccgactgttcctgtccatgttcaagctgtacaccaaaagtg
aaggaaaatcttctagaacaagagttagacggagatgtaagcgggctaacagaattaatt
catcaccatgttcccgaagcaaaattattagaaagcattggccaggagctgatatatctt
cttccaagcaaagatttcaagttccgtgcctatgccagcctcttcagagaactggaggaa
actcttggggacttgggactaagcagctttggcatttctgatacaccactagaggagatt
ttcctgaaagttacagcagattcggtgactggaacagagactccagaggaatggatgtta
caacaaaggaaatcgcgaacaagtctaggagtggataaccagacaactgtaatcaatatt
gataataaaggccaagaatcatccatcagaaaggattctcaccactgcaaagcagaaaaa
aatccacctaatatcaatgacagagaggcagatggaagagggtcccggcaaataaagggc
acagagctactacaacaacagttcaatgcactgataattaaacgatttaagcatgccact
agaagccataaggatttctttgcgcagattgttcttcctgccagttttgtgttgctggct
cttgtatttactctcattgttcctccatttggagagtatcccagtctaactcttcacccc
tggatctatgggcaacagtttgttttcttcagcaatgagcagcctgggaatgagcagatg
gctaccttttccaatgcattcttaaacagtccagggcttggaacacgctgtatgaaagac
caaccactatccaaaaagtatcaatgcactaatacctcaaatgaatggaccatgcctgct
gtgtctccaagtgtaaccaacatgttgttatctcaagaatggacgcgtgataatccatcc
ccatcatgtacttgtagttcaaggagtaagctgatgatgctcccagaatgccctgaaggt
gctgggggacgccctcctccacagcggatccagcccagctctgagataattcaggacctc
actgaacgaaatatttcagattttctgctcaaaacataccctgatctgataagaagcagt
atgaaaagcaaatactgggttaatgaacagaggtatggaggaatttctgttggtgggaaa
cttcctgttctgcatgtgaaagggggagatattgtttcctttttcagtcaagttggtcaa
atgaccaatgtgacagctggcacgacaacaaaggccatctcacaggaactgcagaccttt
ctccagaatctggaaaccgaagacaatatcaaggtatggtttaacaataagggttggcac
tctatggttatcttcataaacgttgctaacaatgctatactacgagccaatctgggtgca
gacaaggatcctgaagagtttggtataactacaatgaaccatcctctgaatctcacaaag
gatcagctttctgaagtcacagtgttgacaacctcagtggatgtagttgttgcaatctgt
gtgatttttgccatgtcattcatcccagccagttttgttctctatttgattcaagagaga
gtgtccaatgccaagcatcttcagttcgtcagtggtgttactcctgctatttactggctc
acaaactttgcttgggatattataaattatgctataagtgttgccatggttgtgataata
ttcattgcttttgacaagaaagcctacacttcttccagtaacctgcctgcactgattgca
ttgctatttttctatgggtgggctgtgatccctatgatgtatcctgcctcttacttgttc
aatgtccctagcactgcctatgttgccttatcttgtatcaatctattcattggcataaat
agcagtgccatcacatttatcctggacctgtttgagaacaacaggtctctgttgaagttc
aatgagaagttgaaggatctgcttcttatcttcccacatttctgcctgggccgtggactc
atagatttagccatgaaccaagcagtgacagatgtatatgctcggtttggtgaagaacat
gtctcaaatcctttccagtgggagttcctgggcaggaatatctttgcaatggccgttgaa
ggagttgtgtactttactttaaatctcctaattcagcatcgcttctttttcagcacatgg
ttttcagagcctcctaaagggcttgtagagggtgaagatgaagatgttgcacaggaaagg
cagagagttataaaagggggaggaaaaaatgatattttaaaactgaaggaattaactaag
acatatccagggaaacaaagccctgcagtggatagactctgcgttggagttcggcctgga
gagtgctttgggctgcttggagtcaatggcgctggaaagacgactacgttcaagatgctc
actggagatattcaagtaacatcaggtgatgcctctgtggctggatacagcatcttgcag
gacattgccgatgtgcaccagaactccggatactgtcctcagtttgatgccatcgatgat
ctcctgaccggccgtgaacaccttcagctgtatggacgattacgaggtgtacccgaggat
gaaattgatatggttgcagactggggcattgaaaaactgggtcttggaaaatatgcagac
aatctaactgggacatacagtggcggaaataagcgcaagttgtctactgcaattgcactg
ataggatgtcctccagtagtgcttctggatgaaccaacaacaggaatggatcctcagtca
cgccgattcttgtggaattccatagtcagtatcattaaagaaggcagagcagtggttttg
acttctcacagcatggaagaatgtgaagttctttgcactcgtcttgccataatggtcaaa
ggcactttcaaatgtcttggcaccatacaacatctgaagtataagtttggagacggttat
attgtgaccatgaaggtgagagcctcaaagccaggtttagctccagatccagggcctgtg
gagaaatttattcaaactaacttccctggcagcgtgcaaagagaaaaacactacaacatg
ttacagtaccagttatcctcatcttcactggcaagggtattccagcttctgatctctaat
aaagacagcctcaacattgaggagtattctgtgtcacaaactactttagatcaggtattt
gttaactttgccaaacaacaaacagaagatgaagatatccatttacatcctcgagctgca
ggggccacacgtgacatgaaagtagcacctgctccaccaccaaaaacacctgcacaataa
DBGET
integrated database retrieval system
