Xenopus tropicalis (tropical clawed frog): 496545
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Entry
496545 CDS
T01011
Symbol
smarca4
Name
(RefSeq) transcription activator BRG1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
496545 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
496545 (smarca4)
03036 Chromosome and associated proteins [BR:
xtr03036
]
496545 (smarca4)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
496545 (smarca4)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
496545 (smarca4)
Chromatin remodeling factors
BAF complex
496545 (smarca4)
PBAF complex
496545 (smarca4)
GBAF(ncBAF) complex
496545 (smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
496545
NCBI-ProteinID:
NP_001362194
Xenbase:
XB-GENE-483983
UniProt:
F7EG86
LinkDB
All DBs
Position
3:138914042..138933959
Genome browser
AA seq
1599 aa
AA seq
DB search
MSTPDPPMGGTPRPVPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPIPPQGPAGYP
PENMHQMHKPMDSIHDKAIPEDPRYNQMKGMSMRPAAHSGMGPPPSPMDQHSQGYPSPLG
NSEHVPSPVPSNGPPSGPPMPSGPSAVNMENSDPQQQTSRSPTPFNQNQLHQLRAQIMAY
KMLARGQALPDHLQMAVQGKRPMPGMQQQMPTLPPPAASGTGAGPAPGPVPPNYNRPHGM
AGPTMPPPGPSGAPPGMPGHPAGAPPKPWPEGPMANAAAPATAPQKLIPPQPTGRPSPAP
PAVPPAASPVMPPQTQSPGQPAQPPPIVQFHPKPNRITPIQKPRGLDPVEVLQEREYRLQ
ARIAHRIQELENLPGSLPGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALN
AKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEFHRSVTG
KIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQ
QTDEYVANLTELVRQHKAVQALKEKKRRKKKKVQEITEGQQSALGPDGEPLDETSQMSDL
PIKVIHVESGKILTGADAPKAGQLEAWLEMNPGYEVAPRSDTEESESEDEEEEEDEQQQP
SVTSLLAVDETKKIADPDSDDVSEVHAREIIDNARQDVDDEYGISHAETSGLQSYYAVAH
AVSEKVDKQSTLLVNGILKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL
MEHKRINGPFLIIVPLSTLSNWVYEFDKWGPSVVKVSYKGSPAARRAFVPMLRSGKFNVL
LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRVLLTGTPLQN
KLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFL
LRRLKKEVEAQLPEKVEYVIKCDMSSLQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM
NTIMQLRKICNHPYMFQHIEESFSEHLGFSGGIVQGADLYRASGKFELLDRILPKLRATQ
HKVLLFCQMTTLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNESSSEYFIFLLST
RAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA
AAKYKLNVDQKVIQAGMFDQKSSSHERKVFLQAILEHEEQDEEEDEVPDDETVNQMIARH
EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGR
GSRNRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKTTRKRKRDIDPCIVMPTTSTR
GRERDDEGKKQKKRGRPPAEKLSPNPPKLTKKMKKIVDAVIKYKDSGNGRQLSEVFIQLP
SRKELPEYYELIRKPVDFRKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYED
SIVLQSVFTSVRQKIEKEEESEGEESEEEEDVEEEGSESESRSVKVKIKLGRKEKGQERM
KGRRRTGRGCRAKPVISDDDSEEEQEEANERSGSGSEDD
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagaccctccaatggggggcactccccggcctgtaccttcccccgggcca
gggccttctcctggagctatgctaggccccagcccaggcccctcccctggctctgcacac
agcatgatgggaccaagccccgggccacctattcctccacagggacctgctgggtaccca
cctgaaaatatgcaccagatgcacaagccaatggattccattcatgacaaagcaatccct
gaagacccccgatacaatcagatgaagggtatgagcatgagacctgctgctcactctggg
atggggcctccacccagtcctatggaccagcactctcaaggatacccatcacctctgggc
aactctgagcacgtgcccagccctgtaccatctaatggtcctccctctggccctccgatg
ccttctgggccatcagcggtgaatatggagaactcggacccacaacagcagacaagccga
agtcctactcccttcaaccagaaccagctgcaccagttgcgggctcagataatggcttac
aaaatgttagccagggggcaagctttacccgaccaccttcagatggcagtgcagggaaag
agacccatgcctgggatgcaacaacagatgccaacactacctccacctgctgcttcgggg
actggcgctggtcctgccccaggcccagtgccccctaactacaacagacctcatggaatg
gctggtcctactatgccacctcccggcccttcaggagctccacctggaatgcctggccac
cctgctggtgctccacctaagccttggcctgaaggtcccatggctaatgcagctgcccct
gccactgccccccagaagctgattcctccacagcctactggccgcccttcccctgcccct
ccggctgtcccaccggctgcttcccccgtgatgcctccgcagacacagtctccaggccag
ccggctcagcctcctcccatagtacagtttcaccctaagcccaaccgcatcactcccata
cagaaaccgcgaggcctggatcctgtggaggtgctacaggaacgggagtacaggctgcag
gcgagaattgcacacaggatccaggaactggaaaatcttcctggttctttgcctggagat
ctaaggaccaaagccaccatagagctgaaagctttaaggcttctcaattttcagagacaa
ctgcggcaagaagttgtggtctgcatgcggagggacacggcccttgagaccgccctaaac
gcaaaggcctacaaacgcagcaagcggcagtccctgcgcgaggcgcgtatcacggaaaaa
ctggaaaagcagcagaagattgagcaggagcgcaagaggagacaaaagcaccaggagtat
ctaaacagcatcctccaacatgccaaggacttcaaggaattccatcgctcagtcacaggg
aagatccaaaaactgacaaaggctgtggccacgtaccatgccaacaccgagcgagagcag
aagaaggagaatgaaaggattgagaaggagagaatgcgcaggctcatggctgaggatgag
gagggctacagaaagctgatcgatcagaagaaagacaagcgtctggcctacctcctgcag
cagacggacgagtatgtagcaaatctgacggaactggtgcggcagcacaaggcagtgcaa
gccctcaaagaaaagaagagaaggaaaaagaaaaaggtgcaagagatcacagaaggccag
caatcggcacttggacctgatggagagccactggatgagaccagccagatgagcgacctc
ccaatcaaagtgatccatgtggaaagcggaaagatcttgacgggtgctgatgcgccaaag
gctgggcagctggaggcatggcttgaaatgaaccctgggtatgaagttgcaccacggtcc
gataccgaggagagtgaatcagaggatgaggaagaggaagaagatgaacaacagcagcct
tcagtcacttccctgctggctgtggacgagactaaaaaaattgctgatccagacagcgac
gatgtgtctgaggtgcatgcacgggaaataatagataatgcccgacaggatgtggatgac
gagtacggtatatcacatgctgagaccagtggcctccagtcttactatgcagtggcgcac
gcagtaagtgagaaggtggacaagcagtcaaccctgttggttaacggcatcctgaaacag
tatcagattaagggcctggagtggctggtctccctgtacaacaataacttgaatgggatc
cttgccgatgagatgggtctgggaaagactattcagaccattgctctgattacatacctc
atggaacacaagcgcatcaacgggcctttcctcatcattgtgccactgtcgactttatcc
aactgggtttatgagtttgacaagtggggtccgtcggtggtgaaagtctcctacaagggc
tctcctgctgctcgccgcgcttttgttccaatgctccgcagcgggaaattcaacgtcctc
ctcactacatacgaatacatcattaaggataagcacatactagccaagatccgttggaag
tatatgattgtggatgaaggtcatcgaatgaagaaccatcactgcaagctgacgcaagtc
ctgaacacacactacgtagccccccggcgcgtgcttctcaccggtaccccgctgcagaac
aagcttcctgagctgtgggctcttctcaacttcctgctccccactatattcaagagctgc
agcacttttgagcagtggtttaatgccccctttgccatgactggagagaaggtggatcta
aacgaggaagaaacaatcctaattatccgccgtctccataaagtccttcgtcccttcttg
ctccggcgacttaaaaaagaagtggaagctcaactgcccgaaaaggtggaatatgttatc
aagtgcgacatgtcgtcattacagcgcgttctgtacaggcacatgcaggccaaaggggtg
ctgctcacagacggctctgagaaggataaaaagggcaagggaggcaccaagaccctcatg
aacactattatgcagctaaggaagatctgtaaccatccgtacatgttccagcacatagag
gagtcattttctgaacacttgggattctcgggaggaattgtacagggggcagacctctac
cgggcatctgggaagtttgagctcttagatcggatactgcccaagttgagagccacccag
cacaaggtcctgctcttttgccagatgaccaccctcatgacgatcatggaagattatttt
gcttatcgtggctttaaatacctccgattggacggcaccaccaaggcagaagatcgtggc
atgttactaaaaacatttaacgagtccagttctgaatactttatcttcctgctcagcaca
cgtgctgggggtctgggcttgaaccttcagtcggcagacactgttatcatattcgatagt
gactggaacccacatcaggatttgcaggctcaggaccgagctcaccgaatcgggcagcag
aacgaggtgcgagtgctgcgcttgtgcactgtgaacagcgtggaggaaaagatcctggcc
gccgccaagtataagctaaacgtggatcagaaagttatccaggccgggatgttcgaccaa
aaatcctccagccatgagcgcaaggtcttcctgcaggccattctagagcatgaagaacaa
gatgaggaggaagatgaggtgccagacgatgagactgtgaatcagatgatcgctcgacac
gaggaagagttcgaccttttcatgcgtatggatctggacaggcgaagagaggaagcccgt
aatcccaaacgcaaacctcgcctcatggaggaagatgagctgccgtcctggatcattaag
gacgacgccgaggttgagcgccttacttgcgaagaagaagaagaaaagatgtttggccgc
ggctcccgtaaccgcaaggaggtggattatagtgactcgctcacggaaaagcagtggctg
aaggccatagaagagggcactctagaagagattgaggaagaagtgcgccagaagaaaacc
actcgcaagaggaagagagatatagacccttgcatagtcatgcccaccacaagcacacgg
ggcagggagagggatgacgagggtaagaaacagaagaagagggggcggccccctgccgag
aaactttccccaaaccccccaaaactcacaaagaaaatgaagaagattgtggatgccgtc
attaagtacaaagacagtggaaacgggcgccagctaagtgaagtttttatccaactgcca
tcccgtaaggaactccctgagtactacgagctgatccgtaagccagtggacttcaggaag
atcaaggagaggatccgaaaccataagtaccgcagcctaaatgatctggagaaagacgtc
atgctgctgtgtcagaatgctcagaccttcaacctggagggctccttgatctatgaagac
tcgattgtgctccagtccgtgttcaccagtgtgagacagaagatcgagaaggaagaggag
agcgagggagaggagagtgaggaagaggaggacgtggaagaagaaggctcagagtctgag
tctcgctccgtgaaggtgaagattaaactgggtcgcaaggagaaggggcaggagaggatg
aagggacgcaggcggaccggccgagggtgcagagccaagccggtgatcagcgatgatgat
agcgaggaagaacaagaagaggccaatgagcgctcagggagcggaagcgaagacgactga
DBGET
integrated database retrieval system
