Xenopus tropicalis (tropical clawed frog): 496549
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Entry
496549 CDS
T01011
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
496549 (ddx1)
03016 Transfer RNA biogenesis [BR:
xtr03016
]
496549 (ddx1)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
496549 (ddx1)
Spliceosome [BR:
xtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
496549 (ddx1)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
496549 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
496549
NCBI-ProteinID:
NP_001011133
Xenbase:
XB-GENE-969096
UniProt:
Q5XH91
LinkDB
All DBs
Position
5:140651842..140669066
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTSVKTGSTVLNKWQMNPYDRGSSFAIGSDGLCCQSREIKEWH
GCRSTRGVNKGKYYYEVSCHDQGLCRVGWSTLQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYIDIDNGTVKYSKNGKDLGLAFQIPAHLKNQAVFASCVLKNAELKF
NFGEEDFKFPPKDGFVALSKAPDGHVVKSQNTGSAQVSQAKNLPNAPKALIIEPSRELAE
QTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIVVGTPGRIDDLISTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWERLGKNHIRTDGVHDKDNTRPGGN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF
SCVCLHSDRKPQERKHNLERFKKCEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAAEKEKVWYHVCSSRGKGCHNTRLKEDGGCTIWYNETQLLS
EIEEHLTCTISQVEPDIKVPLDEFDGKVVYGQRRATGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLSNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctcagaaatgggggtgatggctgagatcgcccaggctgtggaggaaatg
gattggcttcttcctacagacatccaagcagagtccatacccctgatcctcggtggtggg
gatgttctgatggctgcagaaactggaagtgggaagactggggctttcagcatccctgtt
attcagattgtgtatgaaactctaaaagatcaacaagagggcaagaaaggaaaaacatca
gttaaaactggaagtacagtgctgaataaatggcagatgaatccatatgaccgcggttca
tcttttgcaattggctcagatggcctgtgctgccaaagcagagaaataaaggagtggcat
ggctgcaggtcaactcgaggggttaataaaggaaagtactactatgaagtctcctgtcat
gaccaaggattatgcagagttggctggtctaccctgcaggcctccttagatcttggaact
gataagtttggttttggctttggtggaaccggaaaaaagtctcacaacaagcagtttgac
aattatggagaggagtttactatgcatgacactattggctgttacatagacattgataat
ggcacagtaaagtattcaaaaaatggtaaggaccttggcttagcatttcaaatccctgct
cacttgaagaaccaggcagtctttgcatcatgtgttctaaagaatgctgaactgaaattc
aattttggagaggaagactttaaatttcccccgaaggatggatttgtggcattatcaaag
gctccagatgggcatgtagtgaaatcacagaacactggaagtgcacaagtgtctcaagca
aagaatttacctaatgcaccaaaagcccttattattgagccctcccgtgagctggcagag
caaaccctaaacaacgtcaagcaatttaaaaaatacgtggacagtccaaaactgagggaa
ttgctcattattggtggtgttgcagcaaaggaacagttaacgcttcttgaaaatggggtg
gatatagtggtggggacccccggtaggatagatgaccttatatctactgggaaacttaac
ctttctcaagtccggttcttggtactggatgaagctgatggcttactttctcaaggatat
tcagacttcatcaacagaatccatgggcagatccctcaggtcacctctgatgggaaaagg
ttacaggtgattgtgtgctctgccacgctgcattcctttgatgtaaaaaagctgtctgag
aaaatcatgcacttcccaacatgggtggaccttaaaggagaggattctgtgccagaaact
gtgcatcacgttgttgtgcctgtgaatcccaagaaagacaagcagtgggaaagacttggg
aaaaatcacattcggactgatggtgtgcatgataaagataacacgaggcctggtggaaat
tccgcagagatgtggtcagaagctatcaaagtattaaaaggagaatacactgtccgtgct
attaaggagcataaaatggaccaagcaattatattctgcagaaccaaattagactgcgat
aacatggagcagtatttcattcaacaaggaggaggacctgataagaaaggacatcagttt
tcatgtgtgtgcctacatagtgaccggaaaccacaagaaaggaagcacaacctggaacga
tttaagaaatgtgaagttcggttcttgatctgcactgatgtggctgccagaggtattgac
attcatggagttccatatgttattaatgttaccctccctgatgagaaacagaactacgtc
catcgcattggtagagttggtcgagctgaaagaatgggtttggccatatctctggtagcc
gcagagaaggagaaggtgtggtaccatgtgtgcagcagccgtggcaaaggctgtcataac
accagacttaaggaagatggtggctgtaccatatggtacaatgagacacagttactgtct
gagattgaagagcacttgacttgcactatatcccaagtagaacctgatataaaggtgccc
ttggatgaatttgatggaaaggtggtctatggacagagaagggctactggaggtggacta
tataagggtcatgtagatattttggccccaactgtgcaagagttggcagctctggaaaaa
gaggctcagacatccttcctgcaccttggatacctttctaatcagctcttccgaaccttc
tga
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