Xenopus tropicalis (tropical clawed frog): 496583
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Entry
496583 CDS
T01011
Symbol
hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04137
Mitophagy - animal
xtr04140
Autophagy - animal
xtr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
496583 (hif1a)
04137 Mitophagy - animal
496583 (hif1a)
04148 Efferocytosis
496583 (hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
496583 (hif1a)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
496583 (hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
496583
NCBI-ProteinID:
XP_031746581
Xenbase:
XB-GENE-946622
UniProt:
F6VTE9
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Position
8:complement(101957879..101987873)
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AA seq
796 aa
AA seq
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MEGSVVASDKKRISSERRKEKSRDAARCRRSKESEVFYELSHELPLPHNVSSHLDKASIM
RLTISYLRIRRLLDAGDLDGETELDKQLNCFYLKALEGFVLVLTEEGDMIYLSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTFRNGPAKKGKEQITERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHMRVYDANNHNHCGYKKPPMTCMVIICEPIPHPSNIEFPLDSKT
FLSRHSLDMKFSYCDERVTELVGYEPDELLGRSVYEYYHALDSDHLTKAHHNMFTKGQVT
TGQYRMLAKKGGYVWVETQATVIYNSKNSQPQCIVCVNYVLSEVVEKDLILSLGQTACVL
SPVESQEMKMPEIFTELNEDNNAECLFEKLKQEPESLTVLAPDAGDEIISLDFSSGDSDK
PYEDVPLYNDVMLHSTSKKLESTPVTPLPASEMPKPLRSNVDPALNREVVIKMESNPEQL
ELTFTIPQLSKPDSPSDISSSQSSTEPSTPPEYCFDVDSEIASEFKLDLVEKLFAIDTEA
KAPFSTQETDLDLEMLAPYIPMDDDFQLRTFDQLSSLECDSSNPQTLGSMATLFQQSLLP
SSSDFKPEDAINDLKTIIQSPVHSAPASPFDGNRSRTSSPVRPAKSAVDKTEVSRPGTPN
LPVQLKKRCTVLDEELNPKMVALHNVQRKRKMESDGPLYQAIGIGTLFQTNVDPGPNSSL
LWKRVKGSDSDRPSSAEQRTILLLSTDMASQLLGQSLDGTVLPQLTGYDCEVNAPVHGNR
NLLQGEELLRALDQAN
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggagggatctgtagtagcgagcgacaagaaaagaattagctcagagcgccgtaaagag
aaatcacgtgatgctgccagatgtcggaggagtaaggagtcggaggtcttttatgagcta
tcacacgagttgcctttaccgcacaatgtcagctcgcatcttgacaaggcctctatcatg
aggctcaccattagttacctgcggataagaaggttgcttgacgcaggagatttggatggt
gagaccgagttggacaagcaactcaattgtttctatttgaaggcactggaagggtttgtc
ttggttcttactgaagagggggatatgatttatctatctgaaaatgtcaacaagtgcatg
ggcctcacacagtttgagcttactggacacagcgtgtttgatttcactcatccttgcgat
catgaagagctaagggagatgctaactttcagaaatgggcctgcaaaaaaaggaaaagaa
caaatcacagaaaggagtttctttcttcgtatgaagtgcaccttaaccagtcggggaaga
acagtgaatataaagtcagccacgtggaaggtacttcactgtacaggacacatgcgtgta
tatgatgcaaacaaccataaccattgtggctacaagaagcctcccatgacatgcatggtt
ataatctgtgaaccaattcctcatccatcaaatattgagttccccttggacagcaagacc
tttcttagtcgccacagccttgacatgaagttttcctattgtgatgaaagggtaactgaa
ttagtaggatatgaaccagatgaacttttggggcgttctgtctatgaatattatcatgcc
ttggactctgatcatttgaccaaagctcaccataatatgttcacaaagggacaggtgact
actggacagtacagaatgcttgcaaaaaaaggtggttatgtctgggtggaaacacaagcc
actgttatatacaattctaagaattctcaaccacagtgcattgtttgtgtaaactatgta
cttagtgaggtggtagagaaagatttaatcttgtccctgggccagacagcatgtgttttg
agtccagttgaatcccaagaaatgaagatgccagaaatcttcacagagttgaatgaagat
aacaatgcagaatgtttgtttgaaaaactaaagcaggaaccagaatctcttacagttctt
gcacctgatgctggggatgaaattatttcattggatttcagttctggtgattctgacaag
ccatatgaagatgttccactttacaatgatgtaatgcttcactctaccagtaagaaactg
gaaagcacaccagttactcctctccctgcctcagaaatgccaaagcctttgcgcagtaat
gtcgaccctgcacttaaccgggaagttgtgataaagatggaatcaaatccagaacaacta
gaactaacattcaccattccacaactatccaagccagacagcccttcagatatcagttcc
agtcagagctcaacagagcctagtacacctccagaatattgctttgatgttgacagcgaa
attgcaagcgagttcaagctggatttggtggaaaaactgtttgcaatagacacagaggca
aaagcaccattttctacccaggaaacagacttggacttggagatgttggcaccatatatt
cctatggatgatgacttccaattgcgaacctttgaccaactttcatctttggaatgtgat
tcatcaaatccacaaaccttaggaagcatggccactctatttcagcagtctcttttacca
tcctccagtgatttcaagcctgaggatgccataaatgatctgaaaaccattattcagtca
cctgtccatagtgctccagcatcaccatttgatggaaacagaagccgcacaagttcacca
gtaaggccagccaaatcagcagtagataaaactgaagtgtctcgtccaggaactccaaat
ttacctgttcagttaaagaaaaggtgtacagttttggatgaagaattgaatccaaagatg
gttgctttacacaatgttcagagaaaacgtaaaatggaaagcgatggccctctttaccag
gctattggaattggtaccctcttccaaacaaatgttgatcctgggccaaactcttctctc
ttatggaaacgtgtaaaaggatcagactcagacaggccaagtagtgcagagcaaagaaca
atcctcttactgtcaaccgatatggcaagtcagttacttgggcagtcgttggatggaact
gttcttcctcagcttactggctatgactgcgaagtaaatgcccctgttcatggcaacaga
aacttgctccaaggggaagaactactaagagctcttgatcaagctaattga
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