Xenopus tropicalis (tropical clawed frog): 496613
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Entry
496613 CDS
T01011
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
496613 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
496613 (lsm1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
496613 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
496613 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
496613
NCBI-ProteinID:
NP_001011191
Xenbase:
XB-GENE-971223
UniProt:
Q5PPQ2
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Position
3:complement(132213445..132220558)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLLQVSIEEILEDQRVEQQSKNEAEKLKVQALKER
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattatatgcccgggaccgccagcctcatagaggatatagacaaaaaacacttggtc
ttgctgagggatggaaggacccttataggttatctaagaagcattgaccagtttgccaat
ctggtgctgcatcagactgtggagagaatccatgttgggaagaaatatggtgatatacca
cgaggaatttttgttgtgcgcggggagaatgtggtgctgctcggtgagattgacctggag
aaagaaagtgacacccctctccttcaggtctccatagaagaaatcctggaagatcagcgc
gtcgagcagcagagcaaaaatgaagcagagaagctgaaggtgcaagccctgaaggagcgg
ggcctgtcgatccccagagctgacactctggatgaatactga
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integrated database retrieval system
