Xenopus tropicalis (tropical clawed frog): 496941
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Entry
496941 CDS
T01011
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
496941 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
496941 (exosc7)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
496941 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
496941 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
496941
NCBI-ProteinID:
NP_001032342
Xenbase:
XB-GENE-1016257
UniProt:
Q28JA6
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All DBs
Position
6:complement(55056511..55074597)
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AA seq
291 aa
AA seq
DB search
MASVVLSEAEKIYVLHGVQDDLRTDGRGCEDYRCIEVETDVVSNTTGSARVKIGHTDVLV
GVKAEMGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYKIFDNRSSID
LESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPKVRILEDDEGGKDF
ELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLLIAVTSKGILTCMR
KIGKGSLDPESIFEMIETGKRVAKSLHTSLQSALNQEESLGKKRQKIGFLR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgtggtgctgagtgaagcagagaagatctacgttttacatggtgttcaggat
gacctacgtacagatggccgagggtgtgaagactaccgatgcattgaggtggagactgat
gttgtgtcaaacaccaccggatctgcacgagtgaagattggccacacagatgttcttgtt
ggagttaaagcagaaatggggacaccaaagctggaacgggctggagaaggttacctggaa
ttctttgttgactgttctgctaatgccactccagagttcgaagggcgagggggagaggag
ctgggtgcagaaatcgcgttcatgctgtataaaatatttgataatcgaagcagcattgat
cttgaatcactttgcatccaagaacgtgagcattgctgggtcctctacgttgatgttttg
cttttggagtgtggtggaaacctctttgacacaatctcagttgccgtaaaggcagctctg
tttaatgcaagaatacctaaagtgcgaatattggaagatgatgaaggtgggaaagacttc
gaactgtcagatgatccctatgactgtgtgcgactgaatgttgttaatgttccctgcatt
gtaacactgagtaggataggccatcgacatgttgtagatgccacattacaggaagaagcc
tgttctgtggccagtctcctcattgcagtgaccagcaaaggtatcctgacttgcatgagg
aaaatagggaaaggcagtcttgatcctgagagcatctttgaaatgatcgagacagggaaa
cgtgttgctaaatcattacatacatctctacagagtgcattaaatcaagaagaaagctta
ggaaaaaagcgccaaaagattggatttttgcgataa
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