Xenopus tropicalis (tropical clawed frog): 496947
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Entry
496947 CDS
T01011
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
496947 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
496947 (cdc40)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
Step II factors
496947 (cdc40)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
496947
NCBI-ProteinID:
NP_001011457
Xenbase:
XB-GENE-954563
UniProt:
Q5I097
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Position
5:complement(77402905..77433934)
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AA seq
567 aa
AA seq
DB search
MAALTSLVSYGSASDSDSEADSEDCSAHLKSLPPGTGVLRVVDSAPEVAVKEDVETGDHL
DPYAKEVQFNPTYETMFAPEFGPKNPFKTQQMAAPRNMLSGYAEPTHINDFMFEQQRRTF
ATYGYALDPSIDHQETSTKYIGSVDEAEKNQGLTVFETTQKKSDKRKKVKGSDASNIDGF
LGPWAKYIDEKDVAKPSEEEQKELDEITAKRQKRGKQEEDKPAEEKTILHVKEMYDYQGR
SYLHIPQDIDVNLRSTEFPEKCYLPKKQIHVWSGHTKGVSAVRLFPVSGHLLLSCSMDCK
IKLWEVYKDRRCLRTFIGHSKAVRDISFNNAGTQFLSAAYDRYLKLWDTETGQCISRFTN
RKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTITFVDENRR
FVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQN
RFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYSRLKAHDKV
CISAVWHPHETSKVITCGWDGLIKLWD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcttacatctttagtgtcgtacggcagtgcttcagactctgatagtgaggca
gacagtgaagattgcagcgctcatttaaaatctttacccccgggaacaggggtcttgaga
gttgtggactcggcaccagaggtagcggtgaaggaagatgttgagactggagatcacctt
gatccttatgccaaagaggttcagtttaatccaacctatgagacaatgtttgcaccagag
ttcggccccaaaaatccgttcaaaacacagcagatggctgctcccaggaacatgctctca
ggatatgcagaaccaacgcatattaacgatttcatgtttgaacaacagagaagaacgttt
gcaacatatggttatgcgctagatccttccatagaccatcaggaaaccagcacaaaatat
attggttctgttgatgaagcagaaaagaatcaaggtttaacagtgtttgaaacaactcag
aagaaatctgacaaaagaaagaaagttaaaggaagtgacgcctctaacatagatggtttt
cttggcccatgggcaaaatatattgatgaaaaggatgttgcaaaaccttcagaggaagag
cagaaagagttggatgaaataacagcgaaaaggcagaagcggggcaaacaagaggaggat
aagcctgcagaggagaagaccattttacatgttaaggaaatgtacgactatcaaggaaga
tcttatcttcatattcctcaggatatcgatgtcaacttacgctcaacagaattcccagaa
aagtgctatcttccaaaaaagcaaatacatgtctggtctgggcatactaagggtgtcagt
gctgtaagattgtttccagtttctggacatttgctgttgtcgtgttccatggactgcaag
attaagctctgggaggtgtacaaagaccgaagatgcttacgcacatttatagggcacagt
aaagctgtgagagacatatctttcaacaatgcggggacccaattcttaagcgctgcttat
gaccggtatctcaagctttgggacacagaaacaggacaatgtatttctaggtttacaaat
agaaaagtaccatactgtgtaaaattcaatcctgatgaagataaacagagtctgtttgta
gctggaatgtctgataagaagattgttcagtgggatattcgaagtggagagatagtccaa
gagtatgacaggcatctgggggctgtcaacaccatcacatttgtggatgagaataggcgt
tttgtgagcacctcagatgacaaaagcttgagggtgtgggagtgggacattcctgtggat
tttaagtacatagcagagccaagcatgcactctatgcctgctgtcaccttgtcaccaaat
ggtaaatggctagcctgtcagtccatggacaatcagattttaatatttggtgctcaaaac
agattcagactgaataaaaagaaaatcttcaagggccatatggtggcagggtatgcctgt
caagttgacttttctccagatatgagctatgtagtgtcgggagatgcagatggaaagttg
aacatttgggactggaagacaactaaactgtacagcagactgaaagcacatgataaagtt
tgcataagtgctgtttggcaccctcatgaaacttccaaagtaatcacatgtggatgggat
ggtcttatcaagttatgggactaa
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