Xenopus tropicalis (tropical clawed frog): 496947
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Entry
496947 CDS
T01011
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
496947 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
496947 (cdc40)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
Step II factors
496947 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
496947
NCBI-ProteinID:
NP_001011457
Xenbase:
XB-GENE-954563
UniProt:
Q5I097
LinkDB
All DBs
Position
5:complement(77402905..77433934)
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AA seq
567 aa
AA seq
DB search
MAALTSLVSYGSASDSDSEADSEDCSAHLKSLPPGTGVLRVVDSAPEVAVKEDVETGDHL
DPYAKEVQFNPTYETMFAPEFGPKNPFKTQQMAAPRNMLSGYAEPTHINDFMFEQQRRTF
ATYGYALDPSIDHQETSTKYIGSVDEAEKNQGLTVFETTQKKSDKRKKVKGSDASNIDGF
LGPWAKYIDEKDVAKPSEEEQKELDEITAKRQKRGKQEEDKPAEEKTILHVKEMYDYQGR
SYLHIPQDIDVNLRSTEFPEKCYLPKKQIHVWSGHTKGVSAVRLFPVSGHLLLSCSMDCK
IKLWEVYKDRRCLRTFIGHSKAVRDISFNNAGTQFLSAAYDRYLKLWDTETGQCISRFTN
RKVPYCVKFNPDEDKQSLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTITFVDENRR
FVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQN
RFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTTKLYSRLKAHDKV
CISAVWHPHETSKVITCGWDGLIKLWD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcttacatctttagtgtcgtacggcagtgcttcagactctgatagtgaggca
gacagtgaagattgcagcgctcatttaaaatctttacccccgggaacaggggtcttgaga
gttgtggactcggcaccagaggtagcggtgaaggaagatgttgagactggagatcacctt
gatccttatgccaaagaggttcagtttaatccaacctatgagacaatgtttgcaccagag
ttcggccccaaaaatccgttcaaaacacagcagatggctgctcccaggaacatgctctca
ggatatgcagaaccaacgcatattaacgatttcatgtttgaacaacagagaagaacgttt
gcaacatatggttatgcgctagatccttccatagaccatcaggaaaccagcacaaaatat
attggttctgttgatgaagcagaaaagaatcaaggtttaacagtgtttgaaacaactcag
aagaaatctgacaaaagaaagaaagttaaaggaagtgacgcctctaacatagatggtttt
cttggcccatgggcaaaatatattgatgaaaaggatgttgcaaaaccttcagaggaagag
cagaaagagttggatgaaataacagcgaaaaggcagaagcggggcaaacaagaggaggat
aagcctgcagaggagaagaccattttacatgttaaggaaatgtacgactatcaaggaaga
tcttatcttcatattcctcaggatatcgatgtcaacttacgctcaacagaattcccagaa
aagtgctatcttccaaaaaagcaaatacatgtctggtctgggcatactaagggtgtcagt
gctgtaagattgtttccagtttctggacatttgctgttgtcgtgttccatggactgcaag
attaagctctgggaggtgtacaaagaccgaagatgcttacgcacatttatagggcacagt
aaagctgtgagagacatatctttcaacaatgcggggacccaattcttaagcgctgcttat
gaccggtatctcaagctttgggacacagaaacaggacaatgtatttctaggtttacaaat
agaaaagtaccatactgtgtaaaattcaatcctgatgaagataaacagagtctgtttgta
gctggaatgtctgataagaagattgttcagtgggatattcgaagtggagagatagtccaa
gagtatgacaggcatctgggggctgtcaacaccatcacatttgtggatgagaataggcgt
tttgtgagcacctcagatgacaaaagcttgagggtgtgggagtgggacattcctgtggat
tttaagtacatagcagagccaagcatgcactctatgcctgctgtcaccttgtcaccaaat
ggtaaatggctagcctgtcagtccatggacaatcagattttaatatttggtgctcaaaac
agattcagactgaataaaaagaaaatcttcaagggccatatggtggcagggtatgcctgt
caagttgacttttctccagatatgagctatgtagtgtcgggagatgcagatggaaagttg
aacatttgggactggaagacaactaaactgtacagcagactgaaagcacatgataaagtt
tgcataagtgctgtttggcaccctcatgaaacttccaaagtaatcacatgtggatgggat
ggtcttatcaagttatgggactaa
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