Xenopus tropicalis (tropical clawed frog): 548373
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Entry
548373 CDS
T01011
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtr03400
]
548373 (pms1)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
548373 (pms1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HATPase_c
HMG_box_2
Pox_D2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
548373
NCBI-ProteinID:
NP_001136373
Xenbase:
XB-GENE-959881
UniProt:
Q5FVX9
A0A8J0QEU2
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All DBs
Position
9:complement(47381750..47471396)
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AA seq
921 aa
AA seq
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MHCLPSATIRLLSSSQVITSVVSVVKELVENALDANATSIEIKLENFGFDKIEVRDNGKG
IKSDDTPVMGVKHYTSKINSHDDLETLETYGFRGEALASICSVAEVHIATKTLEDDFSKL
YILDSSGHVVSQKPSHLGQGTTVSVHKLFKNLPVRKQYYSTIKKCKEEIRNIQELLMAYG
IVTPNLRILFTNNKALVWQKSKTSDHKMAFMSVVGSAIMNCMVPIQYQSEDPKIFINGYL
PKPYADNTTTSLSSSEKSFLFINRRPIYHKEILKMVRWYHNQSLNKGTPRCYPVFFMNIE
LPASCLDVNLTPDKTQIMLQNKEFVLHAVENVLRSVYPDSQILETHKDAMPEDTVTNNTD
NSNTHLVGNKITRNDGELFSPCTVTNSIQEEKQSENSLEYQKLERDKIPYSDNGEVAYSV
SESTDGFLLNNESSTLQGKASADFGLQFAVRNSNLMDVQSNNTLDSVHQVLEKDTWKTKT
LTKVPDIGDDIWSKGSTFKDSLGDNLEPIKILNLSAETPFVKNTGEDSNIHNSKNENTKP
LNVISEKSGFVTAYDLISEKAIKKPLSAVGYFIQAERSKLIDDNPVASVEEISSKGKDLW
GKLSQDKKSKYEEKAANNLERYNLQIAMATGEHIQKPKDIEKRHKLSSGPSPSRKVKLKT
PLCNQQILDKLFLSQEKKKNKPISSVQVAFKLSKLKQQISRLTDQQNSVKEEFCFINKLS
FPGAWIVASGSEIALLNPYRAEEALIFKQLLKNHKISAEKLDSPIVITDSLLGGSQYLDA
LLSMQKDSPKPNGETYFSDPRLTANGFLIKIMPGKSPVENHIAIEGMASGLPFYGVSDLK
EILSFILINKSNKLCDCRPIKVWNYLEGEAVRLSRQLPINLSKEDVHDIMHRLNNQCGSE
TKACLHGHLFFHHLADVPKTD
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgcattgcttgccatcagctacaatccgcttgctttccagctcccaagtgattacctca
gtggttagtgtggtaaaggaactagtagaaaatgctttagatgctaacgcgaccagcatt
gaaattaagttggagaattttggatttgacaaaattgaagtgcgggataatggaaaaggt
atcaaaagtgatgacacccctgttatgggcgtcaaacattatacttctaaaattaacagc
catgatgacttggaaacattagaaacatatggctttcgtggggaagccctcgcttcaatc
tgctctgtggcagaggttcatattgctacaaagactcttgaagatgatttcagcaagttg
tatatcttagatagcagtggtcatgttgtttcccaaaagccttcccatcttggtcagggt
actactgtcagtgtgcataaactgttcaagaatttacctgtaagaaagcaatattattct
acaatcaagaagtgtaaagaggagattagaaatatccaggagctactgatggcttatgga
atcgtaacaccaaatttaaggattctgttcaccaataataaggctcttgtatggcaaaaa
tcaaagacgtctgaccataagatggcatttatgtcagttgtgggaagtgccatcatgaat
tgcatggttcctattcaataccaatccgaagacccaaagatttttattaatggctatcta
cccaagccatatgccgataacactacaaccagcctctcaagttcagaaaaaagttttctc
tttataaaccgtcgacctatttatcacaaagaaatactgaagatggtgcgttggtatcac
aaccagagtttaaacaaagggacccctcgctgctatccagtattttttatgaatattgaa
cttcctgcttcatgtttggatgtgaatttaactccagataaaactcaaattatgcttcaa
aataaggagtttgtcctacatgctgttgagaatgtcctgagatctgtgtacccagattca
caaatactagaaactcataaagatgcaatgcctgaagacactgtaactaataatacagat
aattccaatacacaccttgttggaaacaaaatcacaaggaatgatggggaattatttagt
ccatgcactgttacaaacagtattcaagaagaaaagcaatctgagaactctttagagtat
caaaaattggaaagggataaaattccttattctgataatggtgaggttgcctacagtgtg
tctgaaagcactgatggttttctattaaataatgaatcttccacgctacagggtaaagcc
agtgctgactttggattacagtttgctgttagaaacagtaatttaatggatgttcaatct
aacaacactttggattctgtacaccaggttttagaaaaggatacatggaaaacaaaaaca
ctgactaaggtccctgatattggtgatgatatttggagtaaaggaagtacttttaaagac
tcgcttggtgataacctagaacctataaagatattaaatttatctgcagagactcctttt
gtcaaaaacactggagaagatagtaatattcacaattcaaagaatgaaaataccaaacct
ttaaatgtcattagtgaaaagtctggatttgtcactgcctatgacttaataagtgaaaaa
gcaatcaagaaaccattgtctgcagtgggttatttcatacaggcagaacgatccaaactt
attgatgataacccagtggctagtgttgaggagatttcttcaaaaggaaaggatctctgg
ggtaaactcagtcaagataagaaatccaagtatgaagaaaaagcagctaataatttggag
aggtacaatctgcagatagctatggcaacaggagaacatattcaaaagccaaaagacata
gagaaaagacataagctctcttctggacctagcccttctcggaaagtaaaattaaaaaca
cccctttgtaaccagcaaatactggacaagttatttctgtctcaagaaaagaaaaaaaac
aaaccaattagtagtgtacaagtagcctttaagttaagcaaattaaaacaacagatttct
aggctcacagaccaacaaaactctgtgaaagaagaattttgcttcataaataagctaagc
ttccctggtgcatggattgtagcatcagggtcagagattgctctcttgaatccctatagg
gctgaggaagctttgatatttaaacagcttttaaagaaccataaaatatctgcagaaaag
ttggattctccaattgtaataactgatagcctcttaggagggtcgcagtatttagatgct
ctgttaagcatgcaaaaggactccccaaagccaaatggagaaacatacttttcagatccc
agacttactgctaatgggtttctaattaaaataatgccaggaaagtcacctgttgagaac
cacattgcgattgaagggatggctagcggcttgcctttttatggagtgtcagatctaaag
gaaatcctaagttttatactaattaacaaaagcaataaactatgtgactgtagaccaatt
aaagtgtggaattatcttgagggagaagctgtaagattgtctcgccagctacctataaac
ctttccaaagaagatgtgcatgacatcatgcacaggctaaacaatcaatgtggaagtgaa
actaaagcttgtctccatggtcatctgttttttcatcatttagcagatgttcctaaaact
gattga
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