Xenopus tropicalis (tropical clawed frog): 548421
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Entry
548421 CDS
T01011
Symbol
cldn1
Name
(RefSeq) claudin-1
KO
K06087
claudin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03272
Virion - Hepatitis viruses
xtr04382
Cornified envelope formation
xtr04514
Cell adhesion molecule (CAM) interaction
xtr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
548421 (cldn1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
548421 (cldn1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
548421 (cldn1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
548421 (cldn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xtr03037
]
548421 (cldn1)
04147 Exosome [BR:
xtr04147
]
548421 (cldn1)
Cilium and associated proteins [BR:
xtr03037
]
Other cilia and associated proteins
Stereociliary proteins
548421 (cldn1)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of ovarian cancer cells
548421 (cldn1)
Exosomal proteins of colorectal cancer cells
548421 (cldn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMP22_Claudin
Claudin_2
L_HMGIC_fpl
DUF1218
Cytochrom_B_C
DUF6336
DUF7937
Motif
Other DBs
NCBI-GeneID:
548421
NCBI-ProteinID:
NP_001015704
Xenbase:
XB-GENE-951609
UniProt:
F7DGK9
LinkDB
All DBs
Position
5:complement(104239965..104251374)
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AA seq
211 aa
AA seq
DB search
MANAGLQLLGFALACLGWIGFIVCIAIPQWKMSSFAGDAIITAQITYEGLWMSCVMQSTG
QMQCKTYDSLLKLDSTMQATRALMICGILVGFFAMCIAAVGMKCLTCLQDDEVKKAKVGV
VGGALFIVAGLCVLIATAWYGNKIAKDFYNVFTPTNSKYEFGPALFIGWAGAALAILGGA
LLCCSCPRRETSYPPPRGYNKSAPPAGKDYV
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgcaggcttgcaacttttaggattcgccttagcttgtctgggctggattggg
tttatagtatgtattgcaatccctcaatggaaaatgtcatcgtttgctggggatgccatt
atcacagcacagatcacctatgaaggactctggatgtcttgtgtaatgcagagcacaggg
cagatgcagtgcaaaacctatgactcgctgctgaagctggacagcactatgcaggctacc
cgagcactgatgatctgcgggattcttgttggtttctttgccatgtgtattgcagcagta
gggatgaaatgcttgacatgtcttcaggatgatgaagtgaagaaggcaaaggttggagta
gtgggaggagcactcttcattgttgcaggtctctgtgttttaatagccacagcctggtat
ggaaataaaattgcaaaggatttttacaacgtgttcacaccaaccaattctaaatatgag
tttggccctgccttgtttattggatgggccggtgctgcactggcaatccttggaggtgcc
ttgctctgctgctcttgtcccagaagagagacttcctacccaccaccaagaggctacaac
aaaagtgcaccacctgctggaaaagattatgtgtaa
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