Xenopus tropicalis (tropical clawed frog): 548449
Help
Entry
548449 CDS
T01011
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03030
DNA replication
xtr03420
Nucleotide excision repair
xtr03430
Mismatch repair
xtr03440
Homologous recombination
xtr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
548449 (rpa1)
03420 Nucleotide excision repair
548449 (rpa1)
03430 Mismatch repair
548449 (rpa1)
03440 Homologous recombination
548449 (rpa1)
03460 Fanconi anemia pathway
548449 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
548449 (rpa1)
03032 DNA replication proteins [BR:
xtr03032
]
548449 (rpa1)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
548449 (rpa1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
548449 (rpa1)
DNA replication proteins [BR:
xtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
548449 (rpa1)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
548449 (rpa1)
MMR (mismatch excision repair)
548449 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
548449 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Por_Secre_tail
IBR
Motif
Other DBs
NCBI-GeneID:
548449
NCBI-ProteinID:
NP_001015732
Xenbase:
XB-GENE-945047
UniProt:
Q5FW17
B7ZUB9
LinkDB
All DBs
Position
2:complement(36008023..36045087)
Genome browser
AA seq
609 aa
AA seq
DB search
MALPVLSEGAISAILGGDSSCKPTLQVINIRSINTGNGPPRYRLLMSDGLNTLSSFMLAT
QLNFLVDNNLLATNCICQVSRFIVNNLKDGRRVIIVMEMEVLKSADLVKGKIGNPHPYND
GQGPPQPAAPAPASAPPPSKPQNISAPPPPSMNRGASKLFGGGSVVNTPGGSQSKVVPIA
SLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDESGEIRATAFNEQADKFFSL
IEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSADVPMVQFEFVPIGEL
ESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTTLWGEDADKF
DGSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSIS
ESRGGTGGGNTNWKSLLEVKTENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKK
VIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGE
LKEKNEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMN
IRKMAAQGV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcacttccagtcctcagcgagggggctatctcggctatattggggggcgattcttct
tgcaagccaactctgcaagtaattaatatccgctcaatcaacactgggaatggtcctcca
cgttaccgccttttaatgagtgatggcttgaataccctttcttcttttatgttggctacc
cagctgaacttccttgtggataacaatcttcttgccacaaactgtatatgtcaagtgtca
cggtttattgtaaataatctgaaagatggaaggagagtcatcattgtgatggagatggaa
gttctgaaatctgctgatttagttaaggggaagattggcaatccacatccttataatgat
gggcaaggaccaccacagcctgctgcacctgctccagcttcagccccaccgcctagcaaa
ccacagaacatttcagctcctcctcctccatcaatgaacagaggagcatctaaattgttt
ggggggggaagtgttgtaaacacacctgggggctctcagtccaaggtagtgcctattgca
agtctcaatccttaccagtccaagtggactgttcgtgctagagttaccaataaaggtcag
atccgcacatggagcaactcccgaggggaagggaagctattttcaattgagatggtggat
gagagtggtgagatccgagctacagctttcaatgagcaagctgacaagttcttttccctt
attgaagtcaacaaggtgtattacttctccaaaggcacactaaaaattgctaacaagcag
tacacctctgtgaagaacgactatgagatgactttcaacagtgagacgtctgttattccc
tgtgatgactctgctgatgtcccaatggtgcagtttgaatttgtacccattggtgaatta
gaaagcaagaataaagatactgtattagatatcatagggatatgcaaaaacgctgaagag
gtaaccaaggtcacaataagatctaacaacagagaagtttctaagagaaacattaattta
atggattcatctggtaaagtggtctcaacaactctgtggggtgaagatgcagataaattt
gatggatcccgacaacctgttgttgcaatcaaaggagcaaggctttccgactttggaggg
cgatcactttcagtcttatcgtctagcactgtaatgatcaatcctgatattcctgaagca
ttcaaactccgtgcatggttcgactctgaggggcaagttgtagaaggaacatctatctct
gaatctcgtggtggaacaggaggtggaaacacaaattggaagtcattgttagaagtgaaa
actgaaaaccttgggcatggtgaaaaggcagattatttcactagcgttgctacaattgtg
tatcttcgaaaggaaaactgtctttatcaggcatgcccttcacaagactgcaacaaaaag
gtgatagatcaacagaacgggcttttccgctgtgaaaaatgtgacaaagaatttccaaac
tacaaatatcgtctcatcctttcagctaacatcgcagactttggggagaatcagtggatt
acctgcttccaagaatcagcagagagtattctgggccagaatgcaacttatcttggtgaa
cttaaggagaagaacgagcaagcctatgatgaggtgtttcagaatgccaacttccgttct
tacacgtttaggattcgagttaagctagagacatacaatgatgaatctcgtataaaggcc
acagcaatggatgtgaagcccgttgaccacaaagaatactctagaaggctgattatgaac
attaggaaaatggcagctcaaggtgtctga
DBGET
integrated database retrieval system
