Xenopus tropicalis (tropical clawed frog): 548525
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Entry
548525 CDS
T01011
Symbol
zeb1
Name
(RefSeq) zinc finger E-box-binding homeobox 1
KO
K09299
zinc finger homeobox protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
548525 (zeb1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
548525 (zeb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-Di19
zf-C2H2_jaz
zf-met
Homeodomain
zf-C2H2_15
Zf-C2H2_ZNF451_C
HVO_2753_ZBP
zf-C2H2_6
zf-C2HE
Zn_SUZ12
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
548525
NCBI-ProteinID:
NP_001015808
Xenbase:
XB-GENE-484655
UniProt:
Q5EB46
LinkDB
All DBs
Position
6:complement(23150775..23213344)
Genome browser
AA seq
1099 aa
AA seq
DB search
MADGPRCKRRKQANPRRNNVTNYNSVLEANSDSDDEDKLHIVEEESVTDAADGEGSVPED
DLPTDQTVLPEGSESAKGSGKTCWEDEVKDEECDSDLENEQNQDPNVEEFLQQSDTAVIY
PEAPEDDQRQGTPEAVGQDENGTPDAFSQLLTCPYCDRGYKRFTSLKEHIKYRHEKNEDN
FSCSMCSYTFAYRTQLDRHMTSHKSGKDQRHVTQSGGNRKFKCPECGKAFKYKHHLKEHL
RIHSGEKPYECPNCKKRFSHSGSYSSHISSKKCIGVAPVNGRVRSGLKTPQCSSPSLSAS
PGSPARPQIRQKIENKPLQEQIPVNQIKTEPVDYEIKPIVVTSGINCSAPLQNGVFSSGS
RLQATNSPQGVVQAVVLPTMGLVSPISINLNDIQNVLKVAVDGNVIRQVLENNHVSLASK
EQGTLTSATIQQAGHSVISAISLPLVDQDGTTKIIINYSLEQPSQLPLVAQNLKKEATAP
AEVCKTEKLPEDLTIKTEKDTKFTEESTCLLGADHPGDKNALQEPKHYDQKKNSLLPESS
KAEPIKSEPTSADPEDGNLTPSQPPLKNLLSLLKAYYALNAQPSSEELSKIADSVNLPLD
VVKDWFEKMQSGEISVESSRPSSPKPGQDSVTENSVESKDESGLHNGTNVSLKSPKQEPE
EPLAVNGPESGTASPTPLNLSSLKNSEGAACSDGTPDGEQQAEPLDLSLPKPHGNVPERP
SITSVYQSSSYSVQEEPLNLSCVKKEPMQVDDVTKAEPMLIINPSANPINIAIPTVTAQL
PTIVAIADQNGVPCLRALAASKRTILIPQVTYTYSTTANPSVPEPQLKNIQPNGNQDERQ
DTSSEGVSNVEDQNDSDSTPPKKKLKKTENGLYACDLCDKIFQKSSSLLRHKYEHTGKRP
HECGICAKAFKHKHHLIEHMRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCKKEAE
ERDGMEQEESAQEILGNENVDSQVSPSQIDSDERESITREEDSEKEEEDKEEDDKEEEDE
KEEDKEEEEKEEEDEKEEDEKDMDDGQEEKEHVGEGEMEEGEAEPLAGTLKDEECVEEDK
CLEEEVTEENVSEKALPQP
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaaacaggcgaaccccagacggaataacgtt
accaattacaacagtgtgctcgaagcaaattctgattcggatgatgaagacaaattgcac
atagtggaagaggaaagtgttacagacgcagcagatggcgagggcagcgttccagaagat
gacttgccaacagaccaaacagtattaccagaaggcagcgagagcgcaaaggggagcggc
aaaacttgctgggaagatgaagttaaagatgaagaatgcgattcagacctagaaaatgaa
caaaaccaagatcccaacgttgaagaattcctacagcaaagcgacactgctgtaatctat
ccggaagcgccagaggatgaccagaggcaaggcacaccggaggcggttggtcaagatgaa
aatggaacgccagacgcattctcccagctcctcacctgcccgtattgtgacaggggatac
aagcgcttcacgtctttgaaggaacatattaagtaccgccatgagaaaaatgaagacaat
ttcagttgctcgatgtgtagttatacctttgcttatagaacccagcttgatcgtcacatg
acctctcataaatcaggaaaagatcagagacatgtgacgcagtctggaggcaaccgtaaa
ttcaaatgccctgagtgtggaaaagcttttaaatacaaacaccatctgaaagaacactta
cggattcacagtggagagaagccatacgagtgcccaaactgcaagaagcgattttctcat
tctggttcctacagttcccacataagcagtaagaaatgtatcggtgtggcgcctgtgaat
ggacgcgtgcgctcagggctgaagactccccagtgctcctccccgtccctttctgcttct
ccgggaagtccagctcgaccacagatccgccagaagatagagaacaaacctttgcaagag
cagattccagttaaccaaatcaaaaccgaacctgtggattatgaaatcaagcctatcgtg
gtgacatcaggaatcaactgctcagcccctttgcaaaatggggtgtttagtagtggtagc
cgtttgcaggcaactaattctcctcagggtgttgtacaagctgttgttctgccaactatg
ggtctggtgtcccccataagtattaaccttaatgacattcagaatgttcttaaggtggca
gttgatgggaatgtaataagacaagtattagaaaataaccatgtcagtcttgcatccaaa
gaacaagggactctcacctccgccacaatccaacaagccggccattctgttatttccgct
attagtcttccattggttgatcaagacggtacaaccaagatcatcatcaattacagctta
gagcaacctagtcagcttcccctcgttgcgcaaaatttgaaaaaagaagccacagctcct
gcagaagtctgcaaaacggagaagttgccagaagatctcactatcaaaactgaaaaggat
actaagtttacagaagaaagcacttgtttacttggtgccgatcacccaggagacaaaaat
gcacttcaagaacccaagcactatgatcagaaaaagaacagcctacttccagagagtagc
aaagccgaacctatcaaatccgagccaacttctgccgaccccgaagatggcaatcttact
ccaagccaaccacctttaaagaatctcttatctcttctgaaagcatactatgctttaaat
gctcagccgagctccgaggaactttctaaaattgcagattcagtaaacctaccactcgac
gtggtaaaagactggtttgaaaaaatgcagagtggagaaatatctgtggagtcatctcgg
ccctcatctccaaaacctggacaagacagtgttacagaaaacagtgtggaatctaaagat
gaaagtggattgcataacggcacgaacgtttcactgaaatcccccaaacaagaacctgag
gaaccgttagctgttaatggtccagaaagtggcacagcttctcctacaccactaaacctc
tcttctttaaaaaactcagaaggtgcagcctgctccgatggaaccccagatggggagcag
caggccgagcctcttgatctatccttaccaaagccacatggaaatgtgccggagcgacct
tccatcactagtgtttaccagagcagttcatattctgttcaagaagaacccttgaacttg
tcttgtgttaaaaaagagccaatgcaagtggacgatgttacaaaagcagagccaatgcta
attattaacccaagtgccaatccaataaatattgctattcctacagtcactgcccagtta
cctacaatcgttgccattgccgatcaaaacggtgttccgtgtttaagagctctagctgcc
agtaagcgaactatcttgattccccaagtgacgtacacttactcaaccactgctaatcct
tcagtaccggaaccgcaactcaagaacatccagcctaatggaaatcaggatgagcggcag
gatacaagctcggaaggagtgtcaaatgtagaagatcagaatgactctgattccacccca
cccaaaaagaaactgaaaaaaacagagaacggtctctatgcctgtgacctctgtgacaaa
attttccagaaaagcagctcactgctgagacataagtatgaacacacaggtaagaggcca
catgaatgtggaatctgtgcaaaggcatttaaacacaaacaccatttaattgagcatatg
cgcctacattctggagaaaagccctatcaatgtgacaaatgtgggaaacggttttcgcac
tccggatcctactctcagcacatgaaccaccgctactcttactgcaagaaggaagccgag
gaacgagatggcatggagcaggaagaatccgctcaggagatccttggcaacgagaacgtg
gattcccaggtgtctccatctcagatagactctgatgagcgcgagagcataacccgggag
gaagacagtgagaaggaagaggaggataaggaagaagacgataaggaagaggaggatgag
aaagaggaggataaggaagaggaggaaaaggaagaggaggatgagaaagaggaggatgag
aaagatatggatgatggacaggaagaaaaggaacatgttggagagggggaaatggaagag
ggagaagcagaaccattggcaggtactttgaaggatgaagaatgtgtagaggaagacaaa
tgtttggaagaagaggtcacagaagagaatgtatcggagaaagccctccctcagccgtag
DBGET
integrated database retrieval system
