Xenopus tropicalis (tropical clawed frog): 548572
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Entry
548572 CDS
T01011
Symbol
ybx3
Name
(RefSeq) Y-box-binding protein 3
KO
K06099
cold shock domain protein A
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
548572 (ybx3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
548572 (ybx3)
03041 Spliceosome [BR:
xtr03041
]
548572 (ybx3)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
Cold-shock domain factors, DbpA-like
548572 (ybx3)
Spliceosome [BR:
xtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
548572 (ybx3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSD
OB_RNB
S1CSD-TOTE-2
Rho_RNA_bind
DUF2606
Motif
Other DBs
NCBI-GeneID:
548572
NCBI-ProteinID:
NP_001015855
Xenbase:
XB-GENE-1007558
UniProt:
Q5EAM6
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All DBs
Position
7:18710281..18730170
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AA seq
248 aa
AA seq
DB search
MSEVTAEEPKPKTPGAEASSPSASSEIERKVLATKVQGTVKWFNVRNGYGFINRNDTKED
VFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQGSRYAADRR
RYRRGYYGRRRGPPREGGDGEIKDGVPEMVQTQQINRQPAGYRPRYRRPMNQPRSIPPTG
EMENKENQNETAAPDQQQLNRRGFRRPYNYRRRPNPGTAPAQGSKESTKMSETPAEKPVP
ASEKSNAA
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagtaacagctgaagaaccaaagcccaaaacaccaggggctgaagcaagttct
ccatctgcttcaagtgaaatagaacggaaagtgctggctactaaagtccagggaactgtg
aaatggttcaatgtgagaaacggctatgggttcattaacaggaatgacaccaaagaagat
gtctttgtccaccagacagcgattaagaaaaataatcctcgcaagtacctgcggagtgta
ggggatggagaggtggtggaatttgatgttgttgctggggaaaagggggcggaggcggcc
aatgtgacaggcccaaaaggagcaccagtacaaggcagtcgctatgcggcagatcggcgc
agataccgccgcggttactatggaaggaggagaggtcccccaagggagggaggagacggt
gagataaaagatggggttccagaaatggtccagacccagcaaatcaatcgtcagcctgct
ggctaccgcccaagatatcgccgacccatgaatcaaccaagatctattccacctactgga
gaaatggaaaacaaggagaatcagaatgagactgcagcccctgaccagcaacaactgaat
cgccgtggattccgaagaccgtacaactaccggcgtagacctaacccaggaactgctcca
gcacaggggagcaaagagtcaaccaagatgagtgaaaccccagctgagaagcctgtgcca
gcaagtgagaaaagcaatgctgcgtaa
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integrated database retrieval system
