Xenopus tropicalis (tropical clawed frog): 548668
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Entry
548668 CDS
T01011
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr00260
Glycine, serine and threonine metabolism
xtr00630
Glyoxylate and dicarboxylate metabolism
xtr00670
One carbon pool by folate
xtr01100
Metabolic pathways
xtr01200
Carbon metabolism
xtr01230
Biosynthesis of amino acids
xtr01240
Biosynthesis of cofactors
xtr04981
Folate transport and metabolism
Module
xtr_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
548668 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
548668 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
548668 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
548668 (shmt1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
548668 (shmt1)
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GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
548668
NCBI-ProteinID:
NP_001015914
Xenbase:
XB-GENE-966676
UniProt:
Q28CF2
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Position
9:15915785..15922749
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AA seq
485 aa
AA seq
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MADSAQINGSTHQETWESHNKMVLEPLDTNDPEVYDIIRKEKNRQRYGLELIASENFASC
AVLQALGSCLNNKYSEGYPGQRYYGGTEFVDEMERLCQKRALEVYGLDPQKWGVNVQPYS
GSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVHPDTG
YIDYDRLEENARLFHPKLIIAGVSCYSRNLDYARMRRIANENNAVLMADMAHISGLVAAG
VVPSPFEHCDVVSTTTHKTLRGCRSGMIFYRKGVRSVDPKTGKETLYNYESLINQAVFPG
LQGGPHNHAIAGVAVALKQALSPEFKLYQRQVVSNCKALSSAMEELGYHVVTGGSDNHLI
LVNLRGQKTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRLGTPALTSRGFKEDDFK
KVAQFIHRGIELTLEIQNAMIPGATLKDFKEKLASEDVHTPKMLALRAEVEKFAGTFPIP
GLPDL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcagactctgcacagatcaatggcagcacacaccaggaaacctgggaatctcacaac
aagatggtactggaacctcttgacaccaatgatccagaggtgtacgacatcatccggaaa
gagaaaaacaggcagcggtacggcctagaactcatcgcttcagagaactttgccagctgc
gccgttctgcaggctctgggttcctgtttgaataacaagtattccgagggctaccctggg
cagaggtactatggtggaaccgagtttgtggatgagatggaacgtctttgccagaagagg
gcgctggaagtgtatggtttggacccacaaaaatggggcgtcaatgtacagccgtactct
gggtctcctgctaactttgccgtttacacggccttggtggagccccacgggaggatcatg
ggtttagacctaccagacgggggtcatctgacccatggcttcatgaccgacaagaagaaa
atctcggccacgtccatatttttcgagtctatgccatataaggttcaccctgacacaggt
tatattgactatgacagactggaggagaatgcccgtttgtttcaccccaagcttattatt
gctggtgttagctgctactcccgtaacctggattatgcacggatgcgacgtattgcaaat
gagaataacgccgtcctcatggctgacatggcgcacatcagcgggctggtagcagccggg
gttgtgccttcaccatttgaacactgcgatgttgtctccaccaccacccacaagacgctg
cgaggctgccgctctggaatgatcttctaccggaaaggggtccgcagtgtggatcccaag
accggaaaggaaacactctataactatgagagtttgattaatcaggcagtgtttcctggc
ctgcagggagggccccataatcatgccattgcaggagtcgctgtcgccctgaaacaagct
ctgtccccagagttcaaactctatcagagacaagttgtttctaactgcaaggccctgtcg
tcggctatggaggaacttggctaccatgttgtaacaggtggatctgacaatcacctaatt
ctagttaaccttcgtggtcagaagactgacgggggcagagcagagaaggtacttgaagct
tgcgccattgcctgcaacaagaacacctgtccaggtgacaagagcgctttgcggcccagt
ggattgcggcttggtacaccggccctgacctctcgggggttcaaagaagacgacttcaag
aaagtggcacagtttattcacagaggcatagagctgacactggagattcagaacgcaatg
attcctggtgccacattgaaggactttaaggagaagttggcctctgaagatgtacacacc
cctaaaatgttggccctgagggctgaggtggagaaatttgctggtaccttcccgatacct
ggacttcccgatctgtaa
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