Xenopus tropicalis (tropical clawed frog): 548729
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Entry
548729 CDS
T01011
Symbol
cul3
Name
(RefSeq) cullin-3
KO
K03869
cullin 3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04120
Ubiquitin mediated proteolysis
xtr04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
548729 (cul3)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
548729 (cul3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
548729 (cul3)
03400 DNA repair and recombination proteins [BR:
xtr03400
]
548729 (cul3)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Cullin
548729 (cul3)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
548729 (cul3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Stu2_CTS
DUF6655
WAC_Acf1_DNA_bd
Motif
Other DBs
NCBI-GeneID:
548729
NCBI-ProteinID:
NP_001015975
Xenbase:
XB-GENE-974982
UniProt:
A4IHP4
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Position
5:123781206..123819577
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AA seq
768 aa
AA seq
DB search
MSNLGKSTGSRKDTKMRIRAFPMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRN
AYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIR
DILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDR
GAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEAR
INEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLACMY
KLFSRVPNGLKTMCECMSLYLREQGKALVSEEGEGKNPVDYIQGLLDLKSRFDRFLQESF
SNDRLFKQTIAGDFEYFLNLNSRSPEYLSLFIDDKLKKGVKGLTEQEVESILDKAMVLFR
FMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSIS
NTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPRHAFEIFRRFYL
AKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMT
ILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFT
VNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHN
VLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacctagggaaaagcaccggcagccggaaggataccaagatgaggatccgagcc
ttcccgatgactatggatgaaaaatatgtgaatagcatttgggatctcctaaagaatgcc
attcaagagattcagcgtaaaaataacagcgggttaagctttgaagaactttataggaat
gcatatactatggtgctccataaacatggggagaagctgtacacaggactgagagaagtt
gtaactgaacatctcataaataaggtgcgagaagatgttttaaattctttaaataacaac
tttttgcaaactctcaatcaagcttggaatgaccatcagactgctatggtaatgattaga
gatatcctcatgtatatggatagggtttatgttcagcagaacaacgttgaaaatgtctat
aatttggggttaataatatttcgcgatcaagtggtgcgctatggctgcataagagaccac
ctacggcagacgttgctcgatatgatcgcaagagagcgaaagggagaagtggtggacaga
ggtgccatcagaaacgcttgtcagatgttaatgattcttggtctggaaggaaggtctgtc
tatgaggaggattttgaggctccgtttttggaaatgtctgcagaatttttccagatggaa
agccagaaatttttagctgaaaacagtgcgtcggtgtacattaaaaaagtagaggctagg
ataaatgaagaaattgagagagtcatgcactgtttagacaaatcgacagaagagcctatt
gtgaaagttgtggagagggagctcatttctaagcacatgaagaccattgtggagatggag
aactcagggctagttcatatgctaaagaatggcaagactgaagatcttgcatgtatgtac
aagttgtttagcagagttccaaatggcttgaaaaccatgtgtgaatgtatgagtctgtac
ctgagggaacaagggaaagctcttgtatctgaagagggagaaggaaagaacccagttgat
tatatccaggggcttcttgacttgaagagccggtttgatcgcttcctccaagaatctttc
agtaatgaccgtctttttaaacaaaccattgctggagactttgagtatttcctcaatctc
aactccagatccccagagtacctctccttatttattgatgacaaactgaaaaaaggagtt
aaaggactaacagaacaggaagtagagtcaattttggacaaggcaatggttctctttaga
ttcatgcaagagaaagatgtgtttgagcgttactataaacaacatttggccagaaggctc
ctcaccaacaagagtgtttctgatgactctgaaaaaaatatgatttcaaagttaaagacc
gaatgtggttgtcagttcacgtccaagctggaaggcatgttcagagacatgagcatctca
aacacaaccatggatgaattcaggcaacatttgcagactacaggggtctctttaggaggc
gtagatctcacagtaagagtgcttaccactggctattggcctacacagtctgccacacca
aagtgtaatatcccacctgcccccagacacgcttttgaaatctttagaaggttttatctt
gcaaaacacagtggtcgtcaacttacattgcaacatcacatggggtctgcagatcttaat
gctacattttatggacctgtgaaaaaggaggatggttctgaagttggtgttggaggtgcc
caagtcactggttctaacactcgaaagcacatcttgcaagtctctaccttccaaatgacc
atactcatgctgttcaacaacagggaaaaatacacttttgaagaaatacagcaggagaca
gacatcccagaacgagagcttgtgagggcattgcagtctctggcttgcgggaagcccacc
caacgtgttcttacaaaggagcctaaatcaaaagagattgaaagtggccacatgttcaca
gtcaatgatcagttcacttccaaattgcacagagttaagatccagacagtggctgctaag
caaggggaatctgaccctgaacgcaaagagacgaggcaaaaagttgatgatgacagaaag
cacgagatagaagctgccatagttcggataatgaaatctagaaagaaaatgcaacacaat
gtcttagtagcagaggtaacacagcagctgaaagcacgattccttccaagcccagttgtt
attaaaaaacgcattgaaggacttattgaacgagaatatttagcaagaacgcctgaagat
cgcaaagtatacacctatgtagcatag
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