Xenopus tropicalis (tropical clawed frog): 548794
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Entry
548794 CDS
T01011
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
548794 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
548794 (wdr33)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
548794 (wdr33)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
Beta-prop_IFT140_1st
EIF3I
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
ASA1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_Vps41
Beta-prop_WDR75_1st
eIF2A
WD40_RFWD3
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
PEP5_VPS11_N
Ge1_WD40
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
548794
NCBI-ProteinID:
NP_001362197
Xenbase:
XB-GENE-6083684
UniProt:
A0A6I8PTU4
LinkDB
All DBs
Position
5:125431619..125481553
Genome browser
AA seq
1598 aa
AA seq
DB search
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDYAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMINNPLNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HSGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLLVSGSKDSQQPIKFWDPKNGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLREELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEIAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDIEPNNLAVIPGMGIPEQLKMAMEQEQMSKEESSSVEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPLMPPSEAIPDRKEENKSDEKKKNQAE
IEQEMAALQYTNPQLLEQLKIERIAQKQAEAPGQLQGLPSPLGGPPHGPSTFQAPGPQLQ
PTQRFQQPHPTQQMQINAQHGPAGQFLPQGSQAAPGPQNFMASGPQGVRSQEMHPGASRL
PVPHGPMGTQGPGPQNQLGPQGPSGPRAIQGMSSHHSMQGAPGPLMGVTPREGQVPHGLR
ENSGPNQGMTIVHPAQDMRGPSGAMIGHGQDIRGPIEMRGPADMRGPQEMRGPADLRGPN
DMRGPQDMRGGPDMRGPQDLRGPLDMRGPQDMRGPPDMRGPQDMRGPSDMGGPQDIRGPL
DMRGPQDIRGPSDMRGPQDMRGPPDMRGPQDIRGPPDMRGPPDIRGPTDMRGPQDMRGPP
DMRGPQDMRGPPDMRGPQDMRGPPDIRSLQDLRGPMDMRGPQNMRGPADMRGPQDMRGMP
DMRGPPDMRVHQDMRGPPDMRGPQDMRGPPDMRGPQEMRGHPDMRGPQDMRGPPDMRGPP
DLRGPPDIRGHPEMRGHPDMRGLPDLRGPPEMRGPHDLRGPPDMRGPHDMRGQPEMRGHQ
DIRVPPDMRHPDMRGGGPQEMRRPNDLRGSHDMRGPQNMRGMPDLHGPQDIRTSPDLRSP
QDIRGPQDMRNLQDSRGPADIGGPQDLRGPQPGNSQGPHSQQNPPRVPHPAQQKAPLLGD
GPRPFNQGGKGQAPPPLIPGLGSQSSQGRGHQGPSPNKGDMRGPPNHQLGSQPERRREPS
PGRAPFLGGQEWSDSRNNRGPSDRRGPPSDSLDRPDDFPPDDRYGPRGREFDGRGGGSSS
QDDKWRRGASGTQFPPNHRDFPDRENRDSNRWEGRRHSEERYPRESEDVRLRGQRDEVFH
RAGPQRREGRGSRGREGFPNPEEFGPDDKFDSKDEPLRGRDGGRGRGRGSQREGRKGLLP
TPEQFSGSERGPNHQSRESREGGPDHFPSSPRRDIPTPDGHSPASRERSSSLQGMDMASL
PPRKRPWHDGPGTPDQRDVDTAGGPTEEPVKAARESSGPSSRSQRPSRSSSQEQEEGSAR
STRGAGSWGRGGSGTNSSQSWRGGPRGSGSSGGGGRSR
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaaattggatccccgcctcgcttctttcacatgcctcgatttcagcatcag
gctcccagacagctcttctataagagaccggactatgcccagcaacaagccatgcaacag
ctcaccttcgatggcaaacgtatgcgaaaagctgtaaaccgcaagactatagattacaac
ccctctgtcatcaagtatttggagaaccgtgtatggcagcgagatcagagagatatgaga
gctattcagccagatgctggttactacaatgatctggttccacctattgggatgattaat
aatcccctgaatgctgtcactacaaagtttgtgcgcacttctaccaataaagtaaaatgc
cctgtatttgtagtcaggtggactccagagggtcgccgattggtcactggagcctctagt
ggagaattcactttgtggaatgggctgacatttaattttgagactattttgcaggctcat
gacagcccagttcgagctatgacatggtcccataatgacatgtggatgctgactgctgat
cacagtggctatgtcaagtattggcaatcaaatatgaacaacgtcaagatgttccaggcg
cataaggaggcgattagagaggccagtttctcccctacggataataaatttgccacgtgc
tcagatgatgggacagttagaatatgggactttctacgttgccatgaggagagaatacta
cgaggacatggtgcagatgtaaagtgtgttgactggcacccaactaaaggacttcttgtc
tctggaagcaaagacagtcaacaaccaattaaattttgggatcccaagaatggacagagc
cttgcaacactacacgctcacaagaacactgtaatggaagtgaaatggaacttgaacggg
aactggctgctcactgcatcacgagatcacctctgtaagctttttgacattcgcaacctc
cgtgaagagctacaggtatttcgaggacacaaaaaagaggccacggctgttgcctggcat
ccagtacacgagggtctgtttgctagtggaggatctgacggctcgctgctgttctggcat
gttggagtggagaaagaagttggtggcatggaaattgctcatgaaggaatgatctggagt
cttgcgtggcatcctttagggcatattctatgctcgggatctaatgatcacaccagcaaa
ttctggacaagaaatcgacctggtgataaaatgcgtgatcgttacaatttgaacttactc
cctggcatgtcagaggatggagtagaatatgatgatattgaacccaataatttagctgtt
atccctggaatgggaatccctgagcagctgaaaatggctatggaacaggaacaaatgagt
aaagaagaatcaagttcagtggagatgaccatacctgggcttgactgggggatggaagaa
gtgatgcaaaaagaccagaagaaagtacctcagaaaaaagttccttatgctaaacccatc
cctgctcaattccaacaggcatggatgcaaaacaaagtgccactaatgccaccatcagaa
gccattcctgaccgcaaagaagagaacaaatcggatgaaaagaagaagaaccaggcagag
attgagcaggagatggcagctttacaatataccaatcctcagctgctggagcaactaaag
attgaaagaatagcacagaagcaagctgaggcaccagggcaacttcagggtctcccatct
cctttgggtggacctccacatgggccatccacattccaggctccaggacctcagctacaa
ccaacacaaagattccagcagccccaccccacacagcaaatgcaaataaatgcgcaacat
ggtccagcaggacagtttcttccacaaggatctcaagcagccccaggtccacaaaatttc
atggcttctggtccacagggggtgagatctcaagaaatgcaccctggagccagtagactg
ccagttcctcatggaccaatgggtacacaaggtcctgggccacaaaatcagctagggcct
cagggaccttcagggcctagggctattcaaggaatgtcctctcaccatagcatgcaaggg
gcacctggtcctcttatgggagttactccaagggaaggacaggtaccacatggacttcgt
gaaaattcaggccctaatcaaggcatgacaatagtacatccagcacaagacatgagaggc
ccctctggagcaatgattggacatgggcaagatatacggggcccaattgaaatgaggggg
cccgcagatatgcgaggaccacaggaaatgagaggtccagcagacttaagaggtcccaat
gatatgcgaggtcctcaggatatgagggggggccctgatatgcgaggccctcaagatttg
cgggggcctctagatatgcgcggtcctcaggatatgagaggccctcctgatatgcgtggt
cctcaagacatgaggggtccctctgatatgggtggccctcaagatattaggggacccctt
gatatgcgcggtccccaggatattaggggcccatctgatatgagaggcccacaagatatg
cggggccccccagacatgagaggaccccaggatatcaggggtcccccagatatgagaggg
ccaccagatatcaggggccccacagacatgcgtgggcctcaggatatgagaggacctcca
gacatgcgtggacctcaggatatgaggggtcccccagacatgcgtggtcctcaagatatg
agaggacctccagacatacgtagccttcaggatttgagaggacccatggacatgcgtggc
ccgcaaaacatgaggggtccagctgacatgcgtggcccccaagatatgagggggatgcct
gatatgagaggacctcctgacatgcgtgtccaccaagatatgcggggaccacctgatatg
cgtggtccacaagatatgcgaggaccacctgacatgcgtggtcctcaagaaatgcgagga
catccagatatgcgtggccctcaagatatgcgaggacctccagatatgcgtggtccccct
gacttgcgtggccctccagatatcaggggtcatccagaaatgcgtggacacccagatatg
cgtggccttccagacttgcgagggccaccagaaatgcgcggacctcatgatttaagggga
cctcctgacatgcgtgggcctcatgatatgaggggtcaacctgaaatgcgtggtcatcag
gatattagggttccccctgatatgcgtcatccggatatgagaggaggtggcccccaggag
atgagaagaccaaatgatttgagaggatctcatgatatgcgtggccctcagaatatgagg
ggcatgccagatcttcatggaccacaagatataagaacatcccctgatctgcgaagccct
caagatataagaggtcctcaggatatgcgaaatctacaggatagtaggggacctgctgac
attggtggcccccaggatttaagaggccctcaacctggaaactcccaaggacctcatagc
cagcagaaccctccacgagtacctcatccagcacaacaaaaagcaccattactgggagat
ggccccaggccttttaatcagggtggaaaaggtcaagccccacctcctctgatccctggc
ctaggatcccagagttcacaaggacgtggccatcaaggaccaagccccaacaaaggtgat
atgcgtggtcctccaaaccatcagttaggctcgcagccagaacgcagacgtgagccaagc
cctggccgtgctccgttccttggtggacaagagtggagtgattcccggaacaacagagga
ccttctgacagacggggccctccttctgattctcttgataggccagatgattttcctcca
gacgatcggtatggtccacgagggcgtgaatttgacggaagaggtggaggttcttcctct
caggatgacaagtggaggcgtggagcatctggtacacagtttccccctaaccacagagat
tttccagacagagagaacagggattcaaaccgctgggagggtagaaggcattcagaggag
agatatcccagagaatctgaggatgtgaggttacgaggacaaagagatgaagtttttcac
agggctggtccacagaggcgcgaagggcgtggctcccgtgggagggaagggtttcctaac
cctgaggaatttggtcctgatgataaatttgattccaaggatgaaccattaagaggcaga
gatggaggcagagggcgtggccgaggctcccaaagggaagggagaaaaggcctgcttcct
accccagaacagttctctggatcagagcgaggacctaaccatcagtcccgagaatcaaga
gaaggaggacccgatcactttcccagcagtcctcgccgtgacattccaactcctgatggt
cattccccagccagcagggagcgatcttcctcattgcagggcatggacatggcttcctta
cctccacgcaaaaggccctggcatgatggccctggtacacctgaccagagggatgtggac
acagctggggggccaacggaagaacctgtaaaagcagcccgtgagagctcaggcccttca
tcaaggtcccaacggccaagccgctctagctcccaggagcaggaagagggttccgctagg
agtacacgtggagcaggaagctggggaagagggggctctggaacgaactccagtcagtca
tggagaggaggtcctaggggaagtggcagcagtggcggaggtgggaggagtcggtag
DBGET
integrated database retrieval system
