Xenopus tropicalis (tropical clawed frog): 548953
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Entry
548953 CDS
T01011
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04115
p53 signaling pathway
xtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
548953 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
548953 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
548953 (cop1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
548953 (cop1)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
548953 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
548953 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_RIG_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_CAF1B_HIR1
zf-RING_UBOX
Beta-prop_EML
Beta-prop_DCAF4
zf-C3HC4_3
zf-RING_5
Beta-prop_WDR90_POC16_2nd
RING_XB3-XBAT31
zf-C3HC4_4
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
zf-rbx1
zf_C2H2_10
zf-RING_10
Sina_RING
zf-RING_11
zf-RING_4
Prok-RING_4
DUF7708
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
548953
NCBI-ProteinID:
NP_001016199
Xenbase:
XB-GENE-1014311
UniProt:
Q28CJ4
LinkDB
All DBs
Position
4:complement(98558185..98649487)
Genome browser
AA seq
684 aa
AA seq
DB search
MSSSRQSQQLPGPGGGTGPSSSSSSAPSSSSSAGTLRPGLVSGSALSRLGTGGSGSALVG
RPGSSAGRKRPLPTPLCNGLINSYEDKSNDFVCPICFEMIEEAYMTKCGHSFCYKCIHQS
LEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFDDKRLKLDPSNGHRWQIFQDLLG
TDQDNLDLANVNLMLQLLVQKKRQLEAESHAAQLQILMEFLIVARRNKREQLEQIQKELS
VLEEDIKRVEEMSGLYSPGSEDSTVPQCEAPSPSHSSLIDSTEYSQSPGFSGSSQTKKQP
WYNSTLASRRKRLTAHFEDLEQCYFSTRMARVSDDSRTASQLDEFQECLSKFTRYNSVRP
LATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEM
TCNSKISCISWSSYHKNVLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPK
LLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRN
TKQPIMVFKGHRKAVSYAKFVNGDEIVSASTDSQLKLWNVSRPHCLRSFKGHINEKNFVG
LASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRA
LPDGESNVLIAANSQGTIKVLELV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaagccggcaatctcagcaactccccgggccaggaggtggaacgggcccctct
tcgtcatcgtcgtcagccccgtcttcttcttcttcagcgggtacattgagaccgggacta
gtcagtggctctgctctcagccgactcggaacgggaggcagtggatccgcgttagtaggc
aggccgggaagctcagctggtaggaagaggcctttgcctacacctctgtgcaatgggctc
attaactcctacgaggacaagagtaacgacttcgtgtgcccaatatgctttgaaatgatt
gaggaagcatacatgactaaatgtggacacagtttctgctataaatgtatccatcaaagt
ctggaggacaataaccgctgtccaaagtgtaattatgtggtagacaatattgatcatctc
tatccaaactttttagtaaatgagttaatcctcaaacagaagcaaagatttgatgataag
cggctgaagctggacccatcgaatgggcacaggtggcagatattccaggatttactaggg
acagaccaagataatctagatttggccaatgtgaatctaatgctgcagctgctggtccag
aaaaaaaggcagctggaggctgaatcccatgctgctcagctacagatcctcatggaattt
ctcattgtagctcgccggaataaaagagagcaactggagcagatccaaaaggagctaagt
gtactggaagaggacataaaacgtgtagaggaaatgagtggcttatattcccctggcagt
gaagatagcactgtgcctcaatgtgaagctccttctccttcccacagtagcctaattgac
tcaacagaatacagccaatccccagggttcagtggtagttcccagacaaaaaagcaacca
tggtacaacagcactctggcatcacgaagaaaacgtcttactgcccattttgaggatttg
gagcagtgctacttttcaacaaggatggcacgtgtatcagatgacagtcgaacagcgagt
cagttagatgaatttcaagaatgcctttctaaattcaccagatataattccgtgcgccct
ttagcaaccctctcttatgccagtgatctctacaatggctctagcattgtgtccagcata
gagtttgaccgagactgtgactactttgccattgctggcgtgacaaagaagataaaggtg
tatgaatatggcactgttatccaggatgctgtggatatacattaccctgagaatgaaatg
acatgtaattctaaaattagctgtataagctggagtagctaccacaagaatgtcctggct
agcagtgattatgaagggactgttatcttatgggatgggttcacaggacaaagatccaag
gtgtatcaggaacatgagaaaaggtgttggagtgttgattttaatcttatggaccccaaa
ctcctagcctccggttcagatgatgccaaagtaaagctgtggtccacaaacttggataac
tctgttgcaagtattgaagccaaagcaaatgtatgctgtgttaaattcagcccttcctcc
cgctatcatttagccttcggttgtgcagatcactgtgtccactattatgaccttcgaaac
actaagcagcccattatggtgttcaaagggcatcgcaaagcagtctcctatgccaagttt
gtgaatggggatgagattgtctcagcgtcaacagacagtcaattgaaattgtggaatgtg
tcaaggccacattgccttcgttcttttaagggacatattaatgaaaagaattttgttggc
ttggcttctaatggagactacattgcttgtggaagtgaaaacaactccctctacctgtat
tataagggcctttccaaaaccttgttgactttcaaatttgacacagtcaagagtgtttta
gacaaggatagaaaagaagatgacaccaatgaatttgtaagcgctgtgtgctggcgtgca
ctccctgatggggagtcaaatgtacttattgctgctaacagtcagggcacaatcaaggta
ctggaactggtatga
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