Xenopus tropicalis (tropical clawed frog): 549223
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Entry
549223 CDS
T01011
Symbol
vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
549223 (vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
549223 (vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
549223 (vps36)
Membrane trafficking [BR:
xtr04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
549223 (vps36)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
549223 (vps36)
Exosomal proteins of colorectal cancer cells
549223 (vps36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
MA3
BBL5
Xre-like-HTH
GRAM
Motif
Other DBs
NCBI-GeneID:
549223
NCBI-ProteinID:
NP_001016469
Xenbase:
XB-GENE-954399
UniProt:
Q28HE1
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Position
2:150118783..150135479
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AA seq
387 aa
AA seq
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MDRFSWCTGLLDIDETLVIQQRGVRLSDGEDKTRFDTGTLLLTTHRLIWRDQKNHDFCIA
FPLSQIVFTEEQSGGIGKSAKIVVHLHPPTPNKEPGPYQTSRYSYVKLSFREHGQIEFQR
RLAEELTQRRWERSSSSSPSMQITKGPQTGRIKAVGIVGIERKLEEKRKETDKNISEAFE
DLSKLMEKAKEMVELSKSIATKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGT
HYHMQLAKQLAAMLQAPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLESLKL
PIRLRVFDSGVMVIEHQSHNEEEMVASALETVSEKGSLTSEEFAKIVGMSVLLAKERLLL
AEHMGHLCRDDSVEGLRFYPNLFLTQS
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcttctcctggtgtaccgggctgttggatatagatgagacgctggtgatccag
cagcgtggggtgcgcctgtctgacggggaggacaagaccaggtttgatactgggacacta
cttttgacaactcatagacttatctggagagatcaaaaaaatcacgatttctgcattgcg
ttcccgctatcccaaattgttttcactgaagagcagtctggaggcattggaaaaagtgct
aaaatagttgttcatctccatcctcccacccctaacaaggagcctgggccttaccaaact
agtcgttactcctacgtcaagctgtccttcagagagcatggtcaaatagagttccaacga
cgtctggcagaggaactgactcagagaagatgggaacgttcatcatcatcatcaccatct
atgcaaatcaccaagggcccacagactgggagaatcaaggcagtgggaattgttggcata
gagaggaaactggaagaaaaaagaaaggagactgacaaaaacatttctgaggcctttgaa
gacctcagcaagttgatggaaaaggcaaaggaaatggtggaactgtccaaatcaattgct
accaagattaaagataaacaaggggacattacagaggacgagacaattcggtttaagtcg
tatttgctgagtatgggaatagccaatcctgtcacacgggaaacacatggatctggcacg
cactaccacatgcaactggcaaagcagctggcagcaatgttacaggctccattggaggag
cgagggggcataatgtcccttacagaagtgtactgcttagttaatcgtgccagaggaatg
gagttgctgtcacctgaggatttggtaaatgcctgcaaaatgctggaatctctaaaactc
ccaataaggcttcgtgtgtttgatagcggagttatggtgatcgaacaccagtcccataat
gaagaggaaatggtggcttctgctttagaaacggtttcagaaaaaggctcccttacctct
gaagaatttgccaagattgttggaatgtctgttcttcttgccaaagaaaggctgcttctt
gcagaacacatggggcacctttgtagagatgactcggtggaaggcttgcgcttttatcca
aacctgttcttgacacagagttag
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