Xenopus tropicalis (tropical clawed frog): 549296
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Entry
549296 CDS
T01011
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform 1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
549296 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549296 (stau1)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
549296 (stau1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
549296 (stau1)
mRNA cycle factors
Stress granule specific factors
549296 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Staufen_C
dsrm
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
549296
NCBI-ProteinID:
NP_001016542
Xenbase:
XB-GENE-920408
UniProt:
Q28HT0
A0A8J0PHU9
LinkDB
All DBs
Position
10:38142623..38167079
Genome browser
AA seq
696 aa
AA seq
DB search
MDVNMSQVLNSPAATLSGSQILNKNQHSPLPQPLSIPSTASPLPSENAGRPLQNSALPSP
SVTSSSPAAVSSNMANPKEKTPMCLVNELARFNKIQPIYKLLSEQGPAHSKMFTVQLTLG
DQYWEAEGTSIKKAQHAAAAKALEGTKYPKPTVRPVRGERKYPDSITPTVELNALCMKLG
RKPTYKPLDPYTGIRSAYNYNMRGGGYPPRYFYPFPVAPILYQVELSIGGQQFHGKGRTR
QAAKHDAAAKALKSLQHEPLPDKPAVNGKAADEENLNKSEISQVFEIALKRNMSVNFEVT
KETGPPHMKSFVTKVIVGEFLGEGEGKSKKISKKNAAISVLEELRKLPPLPTVEKMKPKI
KKKTKSIVKLPTSPEYGQGMNPISRLAQIQQAKKDKEPEYILITERGLPRRREFVMQVKV
GNHSAEGMGTNKKVAKRNAAENMLELLGFKVPPPPPKPALKTEEKLPLKKPGDGRKVTFY
EPGSGEDTSNNNKDDEFRMPFHSHQQLPAGILPMVPEVAQAVGVNQGLHTKEFNRVAPNP
AKATVTAMIARELLYAGISPTADTILKNNNNAAGLVLHGPFTRPSEQLNYLSRVQGVEVE
YKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKLLSELDQQNPEMPR
TGNGPMSVCVKPEMESDPLLKPANSNTLGQTLDSTA
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcaacatgtctcaagttctcaactcgcctgccgccaccctctcagggagccaa
atcctgaacaagaaccagcattctcctctaccccagcctttgagtattccttctactgcc
agtccgctgccctctgaaaatgcaggtagacctcttcaaaactctgctttaccctctcca
tctgtcacatccagcagtccagctgcagtttcttctaacatggcaaaccccaaagagaaa
acccccatgtgtcttgtgaatgagttagcccgtttcaacaaaattcagcccatatataaa
ctgctgagtgaacaaggtccggctcattcaaagatgttcacagtgcagctcactctaggg
gaccagtactgggaggccgaagggacgagtattaaaaaagctcaacacgccgctgccgcc
aaagccttggaggggacaaagtaccccaagcctacagtccgccctgtccgcggtgagaga
aaatacccagatagcatcacgccaacggttgaacttaacgcactgtgcatgaaactcgga
aggaaacccacatacaaaccattggatccctacaccgggatccgctcagcttataactac
aatatgcgaggcggaggttaccccccacggtacttctacccatttcctgtggctcctatc
ctttatcaagtggaattgtccattggagggcagcagttccatgggaaaggaaggacaagg
caggccgccaagcacgatgctgcagccaaagcactaaagagcctacaacacgagcctctc
cctgacaaaccagcggtgaacgggaaagcggcagatgaagaaaatcttaataaatctgaa
ataagccaagtgtttgaaattgcacttaaacggaacatgtctgtgaattttgaggtaacc
aaggaaaccggccctccccacatgaagagttttgtaactaaagtaatagttggtgagttt
ctgggtgaaggtgaaggaaagagcaaaaagatatcaaagaagaacgctgctatatccgtg
ctagaggagctccgaaaactgccccctcttccaacagtggagaaaatgaagccaaaaatc
aaaaagaaaacaaagtccattgtaaagcttcctactagtcctgaatatggtcaggggatg
aacccaatcagcaggctggcacagattcagcaagccaagaaagataaagaacccgaatat
attctcatcacagagaggggcctcccgaggcgccgggagtttgtcatgcaggttaaagta
gggaatcattcagccgagggcatgggcaccaacaagaaagtcgccaaaaggaacgctgct
gaaaatatgttggaacttctaggttttaaagtccctccacctcccccaaaacctgcactc
aagactgaagaaaagctccctttgaagaaaccaggagatggaaggaaagtgaccttttat
gagcccggatcaggagaagatacttctaacaataacaaagatgacgagttccggatgcct
tttcacagccatcagcagcttcctgcgggaatcctccccatggtccctgaggttgcacaa
gcggttggggttaatcaaggacttcacaccaaagaatttaacagggtggcccccaacccg
gccaaggcaactgtgaccgccatgatagctagagagctgctgtacgcgggcatctcccca
acggctgacaccatcctgaagaataacaacaacgctgctggccttgtgcttcacggtcca
tttacccggccctctgagcaactaaactatctctctagagtccaaggagtagaggttgaa
tataaagactttccgaagaataataagaatgagtttgtctctctcataaactgttcttct
caaccgccattaatcagccacggcattggcaaggatgtggaatcctgtcacgatatggct
gcattgaacatcttgaaattgctgtctgagctggaccaacaaaacccagagatgcccaga
acaggaaatggaccaatgtctgtatgtgtaaaacccgaaatggaaagtgatcctctcctc
aaaccggctaactcaaacaccttgggacaaacactggacagtacagcctga
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