Xenopus tropicalis (tropical clawed frog): 549557
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Entry
549557 CDS
T01011
Symbol
cpsf4l
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
549557 (cpsf4l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
549557 (cpsf4l)
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549557 (cpsf4l)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
549557 (cpsf4l)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
549557 (cpsf4l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
zf-CCHC
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
549557
NCBI-ProteinID:
NP_001016803
Xenbase:
XB-GENE-1005450
UniProt:
Q28DB2
LinkDB
All DBs
Position
10:complement(31942174..31964389)
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AA seq
269 aa
AA seq
DB search
MQELIASIEKFSFDLEKDIEGQRGALLLPFQGMDKSGAAVCDFYVKGICRKGSTCPFRHL
NGEKTVVCKHWLRGLCKKGDQCEFLHEYDMGRMPECYFYSKFGECSNKDCPFLHIDPASK
VKDCPWYDRGFCKHGPACKHRHTRRVMCANYLVGFCPEGPKCKYVHPKADLVLCNADHPK
NPAVQQRFPATSLPCDLEAIAKHQGLMLEHSRLSHLTVISMVQERIRKLQENVYGGLRPL
EQVTCFKCGERGHYANKCNRSRLAFMMRK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaactcattgccagcattgagaagttcagctttgaccttgagaaagatattgaa
ggtcagcggggtgcactgctgctgcctttccagggcatggataaatctggagcagctgtg
tgcgacttctatgtgaaagggatatgcaggaaaggttccacttgtccattccgacacctg
aatggagaaaagacggtagtctgcaagcactggctccggggtctgtgcaaaaaaggcgat
cagtgtgaattccttcatgagtatgacatgggccgaatgcctgaatgttacttctactct
aaattcggagaatgcagcaataaagactgtccctttttgcacattgaccctgcatctaaa
gtaaaggactgcccatggtatgacagaggattctgcaagcacgggccagcgtgcaagcac
cggcatacgcgcagagtcatgtgtgcaaactacctggttggtttctgtccagagggccct
aagtgtaaatatgtacaccctaaagctgacttggttctgtgcaatgcagaccatccaaag
aatcctgcagttcagcagagattccctgctacatctttgccctgtgacctggaagccata
gcaaagcaccaagggctgatgctagaacattctcggctgtcgcacctgacagtgatcagc
atggtgcaggagcgcatccggaagctgcaggagaatgtctacgggggactgagacccctg
gagcaggtcacctgctttaagtgtggcgagagaggtcactacgcaaacaagtgcaacagg
agccgccttgccttcatgatgaggaaatag
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integrated database retrieval system
