Xenopus tropicalis (tropical clawed frog): 549581
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Entry
549581 CDS
T01011
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
549581 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
549581 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549581 (thoc5)
03041 Spliceosome [BR:
xtr03041
]
549581 (thoc5)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
549581 (thoc5)
Spliceosome [BR:
xtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
549581 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
549581
NCBI-ProteinID:
NP_001016827
Xenbase:
XB-GENE-1015168
UniProt:
Q28DG8
LinkDB
All DBs
Position
1:144820352..144837621
Genome browser
AA seq
678 aa
AA seq
DB search
MSSDSLKKRKPKVNRNEDGKRGRHDEQEGRYYSEEAEVDVRDPREDYQLYKDTCLDLQRL
MSEIQDLKNKGGKDSAMEIEEKKVQSCVHFMTLKKLNRLAHIRLKKARDQTHEAKQKVDA
YHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSVEEFYSEAPATISKPEITSTDSHQ
QTLSRLDWELEQRKRLAEKYKECLASKEKILKEIEIKKEYLNSLQPQLNSIMQASLPVQE
YLSMPFDCMHKQYETARHLPPPLYVLFVQASAYSQACDRKLVVTIEGNVEEARALFKPPE
DSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLCVTLTLKCKEGSTLNLTFY
FLMNLNILTVKVKIQPALELSTAISAGDLLNPDLILSCLYQGDDGKTTPNPANRYQFDKI
GILSLNDYISELGHPYIWVQTMGGLHFPTDQPQPAVIADNALSASHMEKTINLLRARLLS
RLSLHRQFASLEHGSIPVSLECQTLFPAKVISRLTKWNVITYEDYLALPYTKDVIECGLA
KETDQYFYLLIERGTAKLNGVVVLNPGYCAVPPVFSLCLNWKGERSSSNDDNIRVMESEV
NVYFKELCGPPPGFQLLTNQIQRLCMLLDVYLETERHDNSVEGPHEFPPEKICLRLLRGP
SRTKPFKYNYPQGFFSHR
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagattctttaaagaaaagaaagcccaaagtaaatcgaaatgaggatggcaag
agaggtcgccacgacgagcaggagggtcgatattacagtgaagaggctgaagtagatgta
cgagatccaagagaagactatcaactatacaaagacacttgtcttgatttgcagagattg
atgtctgaaatccaagatttaaagaacaaaggaggcaaagacagtgctatggagatagaa
gaaaaaaaggtccaaagctgtgttcacttcatgactctgaagaagctcaatcgcttggcc
cacattcgacttaagaaagctcgagaccaaactcatgaggccaagcagaaggtggatgca
tatcatttgcaactgcaaaacctgctatatgaagtcatgcatttacagaaagagattaca
aaatgtctagagtttaaatcaaagcatgaagagattgagttagtgagtgtggaggaattt
tacagtgaagcacctgcaaccataagtaagccggaaattacttccactgactctcaccag
cagaccttgtcacgtctggactgggaactggaacaaagaaagaggcttgcagagaagtac
aaggagtgtttggccagcaaggagaagatcctaaaagagattgaaattaagaaggagtat
cttaatagtttacagccacagcttaacagcattatgcaggcctcacttccagttcaagaa
tatttatccatgccgtttgactgcatgcataaacaatatgagacagcacgccaccttcca
ccaccactatatgttttatttgtccaggctagtgcctacagccaagcttgtgaccggaag
cttgtggtaaccatcgaaggaaatgtagaagaggcaagagctttgtttaagccaccagaa
gattctcaagatgatgagagcgattctgatgctgaggaggagcagacaacgaagcgacga
cgcccaacacttggagttcagttagatgacaagaggaaggaaatgcttaaaaggcatcct
ctttgtgtcaccctaacattgaagtgcaaagaaggaagcactctgaatctgactttttac
tttctcatgaacctcaacatcctgaccgtaaaagtcaaaattcagccagctttagaactc
tctactgccatttctgctggtgacctactgaatccagatttgatccttagttgtttatac
caaggggatgatggaaagaccactccaaatccagcaaacagataccagtttgataaaatc
ggaatcttgtcccttaatgactatatatctgaactgggacacccatatatatgggtccaa
acaatgggaggacttcattttccaacggatcagccgcagcctgcagtcatagcagacaat
gctctcagtgctagtcacatggagaagactattaacttgctgagagccagattgctttca
cgcttgtctttgcaccggcagtttgcctccttggaacatggtagcattcctgtatctttg
gagtgccaaactcttttcccagccaaggttatatctcgactgacaaagtggaatgtcatc
acctatgaggattatctagcgctgccgtatacaaaagatgttatagagtgtggactagca
aaggaaacggatcagtatttctatctgcttattgagcgaggaacagctaagctcaatgga
gtagtggttctgaaccctggttattgtgctgtacctccagtgtttagcctctgcctaaac
tggaaaggagaacgctcatccagtaatgatgacaatatcagggttatggagagtgaggtc
aatgtctacttcaaggaactgtgtggccctcctccaggattccagctgctgacaaaccaa
attcagaggctttgcatgctgttggatgtctacctagaaactgaacgccatgacaacagt
gtggaagggcctcatgagtttcctccagaaaagatctgtctgcgcctactcagggggccg
agtcgtaccaagccattcaagtataattaccctcaaggattctttagtcaccgctga
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integrated database retrieval system
