Xenopus tropicalis (tropical clawed frog): 549752
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Entry
549752 CDS
T01011
Symbol
u2af2
Name
(RefSeq) splicing factor U2AF 65 kDa subunit isoform 2
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
549752 (u2af2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
549752 (u2af2)
Spliceosome [BR:
xtr03041
]
Complex A
U2 snRNP components
U2 related factors
549752 (u2af2)
Complex B
549752 (u2af2)
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Ortholog
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GFIT
Motif
Pfam:
RRM_1
RRM_MUD2_C
DUF8489
RRM_occluded
Transformer
RRM_7
F07F6_N
DUF8407
Phage_T7_kinase
Motif
Other DBs
NCBI-GeneID:
549752
NCBI-ProteinID:
NP_001001217
Xenbase:
XB-GENE-494184
UniProt:
Q6NVN9
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Position
7:104043063..104054467
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AA seq
456 aa
AA seq
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MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRGREQRSGSRDRRR
RSRSPRHEKKKKIRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPT
PVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK
NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVP
DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ
AIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLMSSQVQMGGHPTEVLC
LMNMVLPEELLDDDEYEEIVEDVRDECGKYGAVKSIEIPRPVDGVEVPGCGKIFVEFTSV
FDCQKAMQGLTGRKFANRVVVTKYCDPDGYHRRDFW
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcgacgagtttgagcggcagctgaatgaaaataagcaagaaagggacaag
gaaaatcgtcatcgaaaacgtagtcacagccgttctagaagccgagaccggaagcgccgc
agccgtagcagagacaggcgaggtagagagcagcgaagtggatccagggatcgaaggcga
cgcagtcgctcaccaagacatgagaagaaaaagaagatccgtaaatactgggatgttcca
cctcctggttttgagcatatcacccctatgcagtataaagccatgcaagctgcgggtcag
attccagctactgctctccttccaacaatgacaccagatggcttggcagttactcctact
cctgtgcctgttgtgggtagtcagatgacaagacaggcccgtcgactctatgttggaaat
attccatttggaatcactgaggaagcaatgatggatttctttaatgcccagatgcgcctt
ggtggattgactcaagcgcctggaaatcctgtactggctgttcagatcaatcaagacaaa
aactttgccttcttggagtttcgttctgttgatgaaacaacacaggcaatggcttttgat
gggataatttttcaaggccagtctctcaaaataaggcgtcctcatgattaccagccttta
ccaggcatgtctgaaaacccatccgtgtatgtaccaggggtggtttctacagttgtccct
gactctgcacacaagcttttcattggaggtttacccaactatctgaatgatgaccaggtc
aaagaattgcttacatcttttgggcctttaaaagcatttaatttggtaaaagacagtgcc
acaggcctatcaaaaggctatgccttttgtgaatatgtggatattaatgtcacagatcag
gcaattgctggactgaatgggatgcaactgggtgataaaaagcttttggtacagagggca
agtgttggagctaagaatgcaactctgagcacaataaaccagactcccgtgacccttcaa
gtccctggtcttatgagttctcaggtgcagatgggtggtcatccaacagaggtgttgtgc
ctaatgaatatggtgctgccagaagagttgttagatgatgatgagtatgaggagatagtg
gaggatgttagggatgagtgtggcaaatatggcgctgtcaaatcaattgaaataccacgt
ccagtggatggagttgaagtgccaggatgcggcaagatctttgtagaatttacgtcagtc
tttgattgccagaaagccatgcaaggactcactgggcgcaaatttgctaacagagtggtg
gttacaaaatactgtgatcctgatggttaccaccgccgtgatttctggtag
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