Xenopus tropicalis (tropical clawed frog): 549758
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Entry
549758 CDS
T01011
Symbol
sox13
Name
(RefSeq) transcription factor Sox-13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
549758 (sox13)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
549758 (sox13)
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HTH_63
Motif
Other DBs
NCBI-GeneID:
549758
NCBI-ProteinID:
NP_001017004
Xenbase:
XB-GENE-481889
UniProt:
Q28EW4
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Position
2:complement(68440471..68561825)
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AA seq
566 aa
AA seq
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MDNLQGELVSFPASQQECRISAKIPVSPSEGIEGHCFKVEEDYEEPALQSGTPPFFTKQD
YESPPQDTNDLCELQADSSGSGRKEENLQLSKTVRDAMPALEKLLSNDWREILLGTKESL
AEKELQLLFMIHQLTRLRDQLLSAHSEHRNMAAMLFEKQQQQMELARQQQEQIVKQQQQL
IQQQHKINLLQQQIQHVNMPYVMIPAFPPAQTVTADPQMSLPIQPIPCKPVEYPMSLLHN
STTRGSVSAKRQETSQPLNLTAKPTDQVPNSRSSPKYRMSPVGSQGGSSMDSASSPQKAN
LPLGFLGEGDAITKAIQEACQLLHGQNTSPEHHQQKYRKELLDTLPEKEVQDGASLQHTE
ESVLGCNMDIDGSRGSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMS
NAEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTCIVEGKRLRVGEYKALMKNRRQDTRQ
GYVITSIGALQCPPSPSGFSSQSLLDNLSQLPSSDHYNPQDCNIQVVKSHLLVSHEPHGA
IPMAKDICSDSEDSGKSDGELVVITD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggataacttacagggtgagcttgtatcctttcctgcaagccagcaggagtgcagaata
tctgcaaagataccagtctctccaagtgaaggcatagaaggacactgctttaaagtggag
gaagattatgaagaacctgctttacaatctggcactcccccattcttcactaaacaggat
tatgaatctccccctcaggatactaatgacttatgcgaacttcaggctgactcttctggg
tctggcagaaaagaggaaaatctgcagctaagcaaaacagtgagagatgctatgcctgcc
ctagagaagttgctgtctaatgactggagggaaatacttctaggtaccaaggaaagcctg
gctgagaaggagctgcagttgctttttatgattcaccaattgacaagattgagagatcag
ttgctcagtgcacattctgagcacagaaatatggcagctatgctatttgaaaaacagcag
cagcagatggagttggcaaggcagcaacaggagcagatagtgaaacaacaacaacagctg
atccagcaacagcacaagattaatctgttacagcaacagattcagcacgtaaacatgcca
tatgtgatgattcctgcctttccccctgctcagactgtaacagcagatccccagatgtca
cttcctatacagcctattccatgcaaacctgtggaatacccaatgtcacttcttcacaac
tccacaacaagaggctctgtatctgccaaacgccaggaaacatcccagcctctaaattta
acagcgaaacccactgaccaggttcccaactccagaagctctcctaaatacagaatgtcc
ccagtgggcagtcaaggtggcagtagcatggattctgcatctagcccccagaaagccaat
ttaccactgggttttctaggagaaggggatgccataactaaagcaattcaggaagcatgt
cagctgcttcatgggcagaacacatccccagaacatcatcaacaaaagtacagaaaggag
cttttggacaccctgccagagaaggaggtccaggatggggcttctctacagcacacagaa
gaatctgttttaggatgcaacatggacatagatggatctcgtggtagtcatattaaacgc
cccatgaatgcgtttatggtatgggcaaaagatgagaggcggaagatcctgcaagcattt
cctgacatgcataattctagcatcagtaagattttagggtctcgttggaaatctatgagt
aacgctgagaagcagccctattatgaggagcaagcaaggcttagtcgccaacacttggag
agatatccagactataagtacaagccacgccccaaacgcacttgcattgtcgagggaaag
agactacgtgtgggagagtacaaagctcttatgaagaaccgcaggcaagacacaaggcaa
ggatatgttattacgtctataggagctctacaatgtcccccttcaccatctggattctca
tcacagtctttgttggacaatctgtcacagcttccttcttctgaccactacaatccccag
gactgtaacattcaagttgttaaaagtcatcttctggtgtcccatgaaccccatggtgcc
atccctatggccaaagatatctgtagtgactctgaagattctggaaagagtgatggggaa
ttggtggtaatcacagactga
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