Xenopus tropicalis (tropical clawed frog): 549770
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Entry
549770 CDS
T01011
Symbol
exosc6
Name
(RefSeq) exosome complex component MTR3
KO
K12587
exosome complex component MTR3
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
549770 (exosc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549770 (exosc6)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
549770 (exosc6)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
549770
NCBI-ProteinID:
NP_001017016
Xenbase:
XB-GENE-998313
UniProt:
Q28F19
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All DBs
Position
4:74927843..74930709
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AA seq
270 aa
AA seq
DB search
MPGDSRRIRGPEESQSPLLYVLSEEGGKAAGRRGRGPSEPRPVFVRAGLLSQAKGSAYLE
AGSGGTKVLCAVHGPRERGMGGERAETRGRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAG
LQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGSALPAAVSCASLALADAGIEMFDLALGC
GLSRGPGGELLLDPDDDEEEAGSGGTMSLSLLPTLNQVSGLISSGEWEGESSEEAVRLCM
EGCQRLYPVLHQCLVKATKRKIPVPQPDTN
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccgggagacagccgccgtattcgtggccccgaagagtcgcagtcccctttgctctat
gtactgagtgaagaaggaggaaaagccgcagggagaaggggccgcggtccgtcagagccc
cggccggtgtttgtcagggccggcctcctgagccaggctaaaggctccgcgtacctggag
gccgggagtggcggcactaaagtgctgtgcgcagttcatgggccgcgggagcgcgggatg
ggaggggagagagcagagacccggggccgcctgctctgtgacctgcgctgggctcccttc
tcccgccgcggaccctggtctggctcttgccccgctgggccctctccccgccaggccggg
ctgcaactacaggaaagtctggaaccggccgtgcgattggatcgctacccccgagcggag
gtgatagtgtgggtcctagtgctggaggatcgcggctctgcgctgcctgcggccgtgtct
tgtgcctcgctggctttggccgatgctgggatagagatgtttgacctggcgctcggatgt
gggctaagccgcggccccggtggggagcttctgctggatccggatgatgatgaagaggag
gctgggagtgggggcaccatgagcctgagcctcttgccaacccttaatcaggtttctgga
cttattagcagtggagagtgggaaggcgagagctcggaggaagcggttagactctgcatg
gaaggctgccagagattgtacccagttttgcaccagtgcctagtgaaagccactaaaagg
aaaataccagtgccacagcctgacacaaactga
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