Xenopus tropicalis (tropical clawed frog): 549781
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Entry
549781 CDS
T01011
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
xtr03015
mRNA surveillance pathway
xtr03040
Spliceosome
xtr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
549781 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
549781 (alyref)
03015 mRNA surveillance pathway
549781 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
549781 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549781 (alyref)
03041 Spliceosome [BR:
xtr03041
]
549781 (alyref)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
549781 (alyref)
TREX complex
549781 (alyref)
Spliceosome [BR:
xtr03041
]
Complex C
Other components
EJC/TREX
549781 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
549781 (alyref)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
F07F6_N
Motif
Other DBs
NCBI-GeneID:
549781
NCBI-ProteinID:
NP_001017027
Xenbase:
XB-GENE-973553
UniProt:
Q28FB9
LinkDB
All DBs
Position
10:complement(27890371..27896464)
Genome browser
AA seq
260 aa
AA seq
DB search
MGDKMDMSLDDIIKLNRSQRPAGRGRGGGRGARGGSARGGAGGRIGGGRGGGGGGAAGGG
GPMRSRPVLTRGGRNRPAPYSRPKQLPDKWQHDLFDSGFGTGAGMETGGKLLVSNLDFGV
SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN
IQLVTSQIEAQRRPIQSQSRGGGITRPRGGAIGFSGANRRGGRGGNRGRGRGAGRNPKQQ
LSAEELDAQLDAYNARMDTS
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaaaatggacatgtctctagatgatatcatcaagcttaatcggagccaaaga
ccggccggaaggggccggggtggaggacggggtgctcggggcgggtcggcccgcggagga
gccggaggccgaattggtggaggccgcggaggaggaggaggaggagcggcgggaggcgga
gggcctatgcggtcaaggcctgtcctgacccgcggcggaaggaaccggcccgcaccgtac
agcaggccgaaacaactccctgacaagtggcagcatgatctgttcgatagtggttttggt
acaggcgctggtatggagactggaggaaaacttcttgtgtcaaatcttgactttggcgtt
tctgatgcagatattcaggagctctttgcagagtttggtactttaaagaaggcagcagta
cattatgaccgatctgggcgaagcttgggcactgcagatgtgcactttgaaagaaaagcc
gatgctctgaaagcaatgaagcagtataatggggtaccactggatggtcggcccatgaac
attcagttggtcacatcacagatagaagcacagagaagacctatacagagccaaagtagg
ggtggtggtatcactcggccacgaggaggagctataggtttttctggtgcaaacaggcgt
ggcggcagaggtggaaatcggggtcgtggaaggggggctggaagaaatccaaaacagcag
ttgtcagcagaagagttggatgcacagcttgatgcttacaatgctcggatggacaccagc
taa
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