Xenopus tropicalis (tropical clawed frog): 549787
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Entry
549787 CDS
T01011
Symbol
pnpt1
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
549787 (pnpt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549787 (pnpt1)
03016 Transfer RNA biogenesis [BR:
xtr03016
]
549787 (pnpt1)
Enzymes [BR:
xtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
549787 (pnpt1)
Messenger RNA biogenesis [BR:
xtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
549787 (pnpt1)
Transfer RNA biogenesis [BR:
xtr03016
]
Prokaryotic type
tRNA degradation factors
549787 (pnpt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
549787
NCBI-ProteinID:
NP_001017033
Xenbase:
XB-GENE-967251
UniProt:
Q28FH4
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Position
5:35487040..35526052
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AA seq
789 aa
AA seq
DB search
MAAPIRCRCYAMKRFLYRAGGAVCARWAGVHRSGLLCYRIPLTPSSREASGAVTVDLGAR
KLEISSGKLARFADGCAVVKLGDSSVMVTAVSRTKPSPSQFMPLVVDYREKSAAAGRIPT
NHLRREVGITPDEILTSRIIDRSVRPLFPAGYFYETQILCNLLAVDGVNKPDVLAINGAS
AALALSDIPWNGPVGAVRVGLVDGEFIINPTRKEMSSSLLNLVIAGGVQSQIVMMEAAAE
NVLQQDFCHAVKLGVKHSQQIIQGIQQLAKEHGKEKRTIQKIFQAPVDIVESARQYASEK
IYAVFSDFTHDKISRDEAINKIRLETEETLRERFPDAEPFEIMEAFSAVSKDVFRNIILN
EYRRCDGRDLTSLRNINCEVDLFKPLHGSALFQRGQTQVLCTVTYDSIESSMKSDHITTA
LSGVKDKNFMLHYEFPPYATNEIGKVTGINRRELGHGALAEKALRPVIPKDFPFTIRVTS
EVLESNGSSSMASACGGSLALMDAGVPISAAVAGVAIGLITKYSPDKNGEIQDYRLLTDI
LGIEDYNGDMDFKMAGTSKGITALQADIKIPGLPLKIVMEAIQQATVAKKEIIQIMNKVI
SKPRPSKKENSPVTETVQVPLSKRMRFVGPGGYNLKKIQAETGVTVSQIDEETFSVFAPT
PSAMHEAREFINEICKDDQEQQLEFGAVYTATITEIRDIGVMVKLYPNMTPVLLHNSQLD
HRKIRHPSALGLEIGQQIQVKYFGRDPTDGRMRLSRKVLQSPAATVIKSLNDRNSITMGT
GDPHTSASS
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atggcagcccccattagatgccggtgttacgcgatgaaacgatttctgtacagagctgga
ggcgctgtctgtgcccgttgggcgggggtacatcgctctgggctgctttgttaccggatc
ccactcacaccgagcagcagggaagcgagcggagccgtgacagtggatttgggagccagg
aagctggaaatttcttctgggaagctggcacggtttgcagatggctgtgccgttgtcaag
ttaggtgattcttctgtgatggtaactgctgtcagcagaactaagccttctccgtcacag
ttcatgccattggtggttgattatcgtgaaaaatctgctgctgctggaagaatacctaca
aatcatctcagaagagaagtaggcatcacccctgatgaaattcttaccagtagaataata
gatcgttctgtacgacctctctttcctgctggctatttttatgaaacacaaatcctgtgc
aatttattagcagtggatggggtgaataaaccagatgttttggcaataaatggagcttca
gctgcacttgcactctcagacataccatggaatgggcctgttggtgcagtgagagttggt
ctggttgatggagaattcattattaaccctaccagaaaagaaatgtcttccagtctatta
aacttggtcatagctggtggagtgcaaagccagatagtcatgatggaagcggctgcagaa
aatgttctacagcaggacttttgccatgcagtcaaactgggtgtgaaacactcacagcag
atcatacaaggcatccagcagctggctaaggaacatgggaaggaaaagagaaccatacag
aagatttttcaggctccagtggatattgtggagtctgcaaggcagtatgcttctgaaaag
atatacgctgtgttttctgattttacacatgacaaaatttctagagatgaagctataaac
aagattagacttgagacagaggaaaccctaagagagaggtttcccgatgcagagccgttt
gaaataatggaggcgtttagtgctgtttctaaggacgtttttagaaacataattttgaat
gaatacagaaggtgtgatgggagagatttgacttctctaagaaatataaactgtgaagtt
gacctctttaaaccccttcatggatctgccttatttcaacggggccaaacacaggttctg
tgcacagttacatatgactcaatagaatcaagcatgaaatctgatcacatcactacagca
ctgagtggtgtgaaagataaaaattttatgctacactatgagtttccaccatatgcgact
aatgaaattggtaaagtgacggggattaacagacgtgaactaggtcatggcgcccttgca
gagaaagcattaagaccagttatccccaaagattttcctttcacaataagagtgacctct
gaagtattggagtctaatggctcatcatctatggcttcagcttgcggtggaagtttggca
ttaatggatgcaggggtgcctatttctgctgctgttgctggagtcgcaataggtctaata
acaaaatacagccctgacaaaaatggagagattcaagattatcgcttacttacagatatc
ctgggaatagaagattataacggtgatatggattttaaaatggcgggtacgagcaaaggt
ataactgctttacaggctgatattaaaatcccaggattgccgctcaaaattgtaatggag
gctattcaacaggcaacagtggcaaagaaagaaattatacaaattatgaataaagttatt
tcaaaaccaagaccaagcaagaaagaaaacagcccagtaacagaaacagttcaggtgcct
ttgtctaaaagaatgcgatttgttggcccgggcggatataatttaaagaagatacaagct
gaaacaggtgtcactgtaagccaaatagatgaggaaactttttctgtttttgctcctaca
cccagtgcaatgcatgaagcaagagagttcattaacgaaatctgcaaagatgatcaagaa
caacagttagagtttggagcggtatatacagccacaattactgaaatcagggatattggc
gtgatggtgaagctttatcctaatatgacacctgtgttacttcataattcacagcttgat
catcgaaagataagacacccaagtgccttgggtcttgaaattgggcaacaaattcaggtg
aagtactttggccgtgatccaacagatgggagaatgaggctctccagaaaagtccttcag
tctcctgcagcaactgtaattaaaagcctgaatgacaggaacagtattaccatgggaaca
ggggaccctcatacatccgcttcctcttag
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