Xenopus tropicalis (tropical clawed frog): 549837
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Entry
549837 CDS
T01011
Symbol
amfr
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04137
Mitophagy - animal
xtr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
549837 (amfr)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
549837 (amfr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
549837 (amfr)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
549837 (amfr)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
549837 (amfr)
Multi subunit type E3
ERAD complex
549837 (amfr)
LMBR1L-GP78-UBAC2 complex
549837 (amfr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2BR
zf-RING_2
zf-C3HC4_2
zf-C3HC4
CUE
zf-C3HC4_3
zf-RING_11
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_16
zf-RING_5
Prok-RING_4
zf-C3HC4_4
RRXRR
zf_RING_Vps8
SVIP
FANCL_C
Motif
Other DBs
NCBI-GeneID:
549837
NCBI-ProteinID:
NP_001017083
Xenbase:
XB-GENE-923086
UniProt:
Q28GC0
LinkDB
All DBs
Position
4:complement(51699366..51718253)
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AA seq
635 aa
AA seq
DB search
MPLLFLERFPWPSLRTYTGLSGLLLGLSLLSAYRSLSGEAAERSMLEGEEAGAQLPPEPV
DLVELFRYLVSDSLGVWVLVNTVCCLLMLIAKLIQHVVFGPLRVGERQHLKDKFWNFIFY
KFIFIFGVLNVQTVEEVVLWFLWFAGLLFLHLMVQLCKDRFEYLSFSPTTPMSCHMRVLV
LLNIMLLACCGLAVLCAIAGYTHGMHTLAFMAAECMLVTTRTTHVVLRYVIHLWDLNHEG
TWEGKGTYVYYTDFVMELSHLSIDLMHHIHMLLFGNIWLSMASLVIFMQLRHLFHEFQRR
IRRHKNYLRVVGNMEAHFAVATPEELEANSDDCAICWDSMQSARKLPCGHLFHNSCLRSW
LEQDTSCPTCRMSLNMADGTRTRVEQQRENQDQNAVPLAVTEGRPRLNHHNHFFHFDGSR
FASWLPSFSVEVMHTTNILGLAQASNSQLNAMARQVLDMFPQVPYHLVLQDLQLTRSVEI
TTDNILEGRIQVPFPTQHQDDVRSATETSEVSAQEESSTATQTERVNLDLSPGLEEYEDF
SVIEAQVSDVEEFEARGSRFSKSAEERQRMLVQRKEDMVQLARRRFLNRTSEEDNPDCSS
ERGSHTDSSSDSTTVRRRMLAAAAERRIQMQQSPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgttattcctggagcgattcccctggcccagcctgcgcacttacaccggcctg
agcggcctgttgctgggcctcagcctgctaagcgcctatcggagcctgagcggggaggcg
gcagaacggagcatgctggaaggagaggaagctggggcacagctgccacctgagcccgtg
gacttagttgagctgttccggtacctggtctctgacagtcttggggtgtgggttctagtg
aacacagtgtgttgccttttgatgctgattgctaaactgatccagcatgtggtatttggt
cccctccgtgttggagagagacagcacttgaaggacaagttttggaacttcatcttttat
aaatttatcttcatctttggggtactcaatgtccagacagtagaggaagtggtcctttgg
tttttgtggtttgctggattgctttttcttcatctcatggtgcagctctgtaaggatcgg
tttgaatacttatctttctccccaaccactccaatgagttgccatatgcgtgtcttggtt
ctgctgaatattatgctcttggcctgttgtggtcttgctgtgctgtgtgcaattgctgga
tacacacatgggatgcacacattggcttttatggctgctgagtgcatgttggtgacaaca
agaaccactcatgttgtgctacgctatgtcattcacctttgggacctaaaccacgaagga
acatgggagggcaaagggacttatgtatactacacagattttgtgatggagctcagccat
ctgtccatagacctaatgcatcatattcacatgttgctttttggtaatatctggctgtcc
atggcaagtcttgtcatcttcatgcagctccgccacctctttcatgaatttcagcgccga
atacgacgccacaaaaactacttacgagttgttggaaacatggaagctcattttgctgta
gcaactcctgaggaacttgaagctaacagcgatgactgcgctatctgctgggattcaatg
cagtctgctcggaagcttccctgcggtcatcttttccacaactcatgcctccgatcctgg
ctggagcaggacacgtcatgcccaacttgcaggatgtcccttaacatggctgatggcaca
agaactcgtgtagaacagcagagggaaaatcaagatcagaatgcggtaccactggcagtt
acagaaggacggccacgtctcaaccatcataatcactttttccattttgatggttctcga
tttgctagttggttgcctagcttctcagtggaagtaatgcatacaaccaacatccttggc
cttgcacaagcaagcaactctcagctgaatgctatggcccggcaggttctagatatgttc
ccacaagttccgtatcatttggttttgcaagatctgcagcttacgcgttctgttgaaatt
accactgataatatattggaaggacgtattcaagttccttttcccacacagcaccaagac
gatgtcagatctgcaacagaaacatctgaagtcagtgcacaagaagaaagcagtactgcc
acacagactgagcgtgtaaatttggatttgagcccaggtcttgaggaatatgaggatttc
agcgtaatcgaggctcaagtgagtgatgtcgaagaatttgaggccagaggcagcagattc
tccaaatctgcagaagagaggcaacggatgcttgtccagaggaaagaagatatggttcaa
cttgcacggagacgttttttaaacaggacttcagaggaagacaatcctgactgttcatca
gagaggggttcacacacagacagttcttcagattcaacgactgtgcggaggcgcatgctg
gctgcagcggcagaaagaagaattcagatgcaacagtccccacagtaa
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