Xenopus tropicalis (tropical clawed frog): 549896
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Entry
549896 CDS
T01011
Symbol
rae1
Name
(RefSeq) mRNA export factor
KO
K14298
mRNA export factor
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
549896 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549896 (rae1)
03036 Chromosome and associated proteins [BR:
xtr03036
]
549896 (rae1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
549896 (rae1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
549896 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40
WDR55
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_Nup120_160
Beta-prop_HPS5
Exonuc_X-T_C
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
549896
NCBI-ProteinID:
NP_001017142
Xenbase:
XB-GENE-995595
UniProt:
Q5FVA9
A0A8J1IWR1
LinkDB
All DBs
Position
10:complement(5521929..5532625)
Genome browser
AA seq
368 aa
AA seq
DB search
MSLFSTPGGFGTGGGSMFGSTATDNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAG
SWANDVRCWEVQDNGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQS
IQIAQHDAPIKTVHWVKAPNYSCIMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPISACSFNHNGNIFAYSSSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgagtttattttctacccctgggggatttggaaccgggggcggcagtatgttcggcagc
acagcgaccgataaccacaatcctatgaaggacatcgaagtcacgtcacccccagacgac
agcatctcgtgcctctcgttcagcccccccacgctgcccggcaacttcctaatcgccggt
tcctgggccaatgacgttcggtgctgggaagttcaggataacggacagaccattccgaag
gcgcaacagatgcacacaggccccgtgctggacgtctgctggagtgacgacgggagcaaa
gtgtttacagcctcgtgtgataaaactgccaaaatgtgggacctgaacagcaaccaatca
atacaaattgcacagcatgatgcccctataaagaccgtgcattgggtaaaggccccaaac
tacagctgtatcatgactgggagctgggataaaagtttgaagttttgggacacacggtcg
cctaacccattgctgactctgcaactcccagagcgatgttactgtgccgatgtggtgtac
cctatggctgttgtggccacggcggagagagggttaattgtgtatcagcttgagaaccag
ccctcagaatttagaagaatagactctccccttaaacatcagcacaggtgtgtcgctata
tttaaagacaagcagaacaaaccaactggttttgcactgggaagcattgaaggaagagtc
gccattcattatatcaacccccccaatccagccaaagacaacttcacgtttaaatgccac
cgctccaacggcacaaacaccaccgcccctcaggatatctacgccgtaaatggcattgct
ttccatcccgtacacggcactttggctacagtcggctcagacggccgattcagtttctgg
gacaaagatgcacggaccaaactgaagacgtcggagcagctggaccagccaatctccgct
tgttccttcaaccacaatggaaacatttttgcctattcgtccagctatgactggtccaag
ggccatgaattctacaacccacagaagaagaactatatcttcttgcgtaacgcggccgaa
gaattaaaaccgcggaataagaaatag
DBGET
integrated database retrieval system
