KEGG   Xenopus tropicalis (tropical clawed frog): 549896
Entry
549896            CDS       T01011                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    549896 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    549896 (rae1)
   03036 Chromosome and associated proteins [BR:xtr03036]
    549896 (rae1)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     549896 (rae1)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    549896 (rae1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_EML_2 WD40 Beta-prop_WDR3_1st WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_NOL10_N Beta-prop_TEP1_C PAC11 Beta-prop_Aladin WD40_RFWD3 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_ACSF4 ASA1 NBCH_WD40 Beta-prop_Nup120_160 ExoI_SH3 Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_CGLA Beta-prop_SPT8
Other DBs
NCBI-GeneID: 549896
NCBI-ProteinID: NP_001017142
Xenbase: XB-GENE-995595
UniProt: Q5FVA9 A0A8J1IWR1
LinkDB
Position
10:complement(5521929..5532625)
AA seq 368 aa
MSLFSTPGGFGTGGGSMFGSTATDNHNPMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAG
SWANDVRCWEVQDNGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQS
IQIAQHDAPIKTVHWVKAPNYSCIMTGSWDKSLKFWDTRSPNPLLTLQLPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPISACSFNHNGNIFAYSSSYDWSKGHEFYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtttattttctacccctgggggatttggaaccgggggcggcagtatgttcggcagc
acagcgaccgataaccacaatcctatgaaggacatcgaagtcacgtcacccccagacgac
agcatctcgtgcctctcgttcagcccccccacgctgcccggcaacttcctaatcgccggt
tcctgggccaatgacgttcggtgctgggaagttcaggataacggacagaccattccgaag
gcgcaacagatgcacacaggccccgtgctggacgtctgctggagtgacgacgggagcaaa
gtgtttacagcctcgtgtgataaaactgccaaaatgtgggacctgaacagcaaccaatca
atacaaattgcacagcatgatgcccctataaagaccgtgcattgggtaaaggccccaaac
tacagctgtatcatgactgggagctgggataaaagtttgaagttttgggacacacggtcg
cctaacccattgctgactctgcaactcccagagcgatgttactgtgccgatgtggtgtac
cctatggctgttgtggccacggcggagagagggttaattgtgtatcagcttgagaaccag
ccctcagaatttagaagaatagactctccccttaaacatcagcacaggtgtgtcgctata
tttaaagacaagcagaacaaaccaactggttttgcactgggaagcattgaaggaagagtc
gccattcattatatcaacccccccaatccagccaaagacaacttcacgtttaaatgccac
cgctccaacggcacaaacaccaccgcccctcaggatatctacgccgtaaatggcattgct
ttccatcccgtacacggcactttggctacagtcggctcagacggccgattcagtttctgg
gacaaagatgcacggaccaaactgaagacgtcggagcagctggaccagccaatctccgct
tgttccttcaaccacaatggaaacatttttgcctattcgtccagctatgactggtccaag
ggccatgaattctacaacccacagaagaagaactatatcttcttgcgtaacgcggccgaa
gaattaaaaccgcggaataagaaatag

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