Xenopus tropicalis (tropical clawed frog): 549917
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Entry
549917 CDS
T01011
Symbol
sdc2
Name
(RefSeq) syndecan-2 precursor
KO
K16336
syndecan 2
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04514
Cell adhesion molecules
xtr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
549917 (sdc2)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
549917 (sdc2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xtr04090
]
549917 (sdc2)
00535 Proteoglycans [BR:
xtr00535
]
549917 (sdc2)
CD molecules [BR:
xtr04090
]
Proteins
549917 (sdc2)
Proteoglycans [BR:
xtr00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
549917 (sdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
TGF_beta_GS
BAMBI_C
Secretin_N
Motif
Other DBs
NCBI-GeneID:
549917
NCBI-ProteinID:
NP_001017163
Xenbase:
XB-GENE-6455361
UniProt:
Q28HM3
LinkDB
All DBs
Position
6:complement(129876047..129939439)
Genome browser
AA seq
190 aa
AA seq
DB search
MRNVWLILPFALLATFSGETWAQADRDLYIDSTESSGNYPVDDDDYSSGSGSGIPARDDD
EDNVVLTTVETLISSPSSEMPYVDTTTLKTQTKIAPESKEPGEVESTNTVLVYGNKDIVQ
TATHTENLFHRTEVLAAVIAGGGIGFLFAVFLILLLVYRMRKKDEGSYDLGERKPSSAVY
QKAPTKEFYA
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacgtgtggctaatccttccctttgccctgctcgctaccttctccggggaaacg
tgggcgcaggctgacagagacctctatatcgacagcacagagtcgtcgggaaactaccca
gttgatgacgatgattactcttctggatctggctcaggcattccagcacgcgatgatgat
gaagacaatgtggtgttaacaactgtcgagacgctaataagcagcccatcaagtgaaatg
ccatatgttgacaccacaacattgaaaacacaaacaaaaattgcgcctgaaagcaaggag
cctggcgaagtagagtcaaccaacacagttcttgtctatggaaacaaggatatcgtccag
actgcaacacacacagagaacctgttccacagaacagaagtacttgcagctgtcattgct
gggggcggcatcggcttcctgtttgccgtattcttaatcctcctgttggtgtaccgcatg
agaaagaaggacgagggcagctacgacctcggcgaacgcaaaccatccagcgccgtctac
caaaaggcaccaactaaagagttttatgcataa
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