Xenopus tropicalis (tropical clawed frog): 550097
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Entry
550097 CDS
T01011
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16
KO
K17890
autophagy-related protein 16-1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04136
Autophagy - other
xtr04140
Autophagy - animal
xtr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
550097 (atg16l1)
04136 Autophagy - other
550097 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
550097 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
550097 (atg16l1)
03029 Mitochondrial biogenesis [BR:
xtr03029
]
550097 (atg16l1)
Membrane trafficking [BR:
xtr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
550097 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
550097 (atg16l1)
Mitochondrial biogenesis [BR:
xtr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
550097 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_RFWD3
eIF2A
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_SPT8
V_ATPase_I
PA4575
HTH_6
DUF7310
HEF_HK
Lipoprotein_6
Motif
Other DBs
NCBI-GeneID:
550097
NCBI-ProteinID:
NP_001017343
Xenbase:
XB-GENE-1011170
UniProt:
Q5I0B9
LinkDB
All DBs
Position
5:126719965..126742140
Genome browser
AA seq
622 aa
AA seq
DB search
MAAGCRGPACPSWRLHISRELRRRDREQRQVFEELISQYKRLLEKSDLQSVLADKLQAEK
YEQQSRHDSSPGPDGMRNDMLLQDMAQMRIKHQEELTELHKKRGELAQTVIELNNQMQQK
DKEIQANEEKIAKYLQTIQDLETECQDLRNKLQELERANQTLKDEYDALQITFTALEDKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSKRRQARLQKELAEAAKEPLSFEHDDDI
EVLNDNADPVGDSAGAQATGRNISKRNSQPAVGGLLDSITNIFGLSESPSLSHRSDSSRR
RSLNSFPASPDCADTPGAGNREVRVPATAVYSFDAHDGEVNAVRFSPGSRLLATGGMDRR
VKLWDVIGNKCEAKGSLTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLT
GHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSG
HFDKKIRFWDIRTECIVRELELQGRITALDLNPERTQLLSCSRDDLIKITDLRANAVQQT
FSAPGFKCGSDWTRVIFSPDGSYVSAGSAEGTLYFWNVLTGKVERMFSKQHSSSINAVAW
SPSGTHVVSVDKGSRGVLWSDF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaggttgccgggggcccgcctgcccttcctggaggcttcacatttccagagag
ctgaggcggagagaccgggagcagcggcaggtgtttgaggagctcatctcacagtataaa
aggctgctggaaaagtccgaccttcaatctgttttggctgacaaactgcaagcagagaaa
tatgagcagcagagccgccatgacagcagccctggcccagatgggatgcgtaatgatatg
ctattgcaggacatggcccagatgaggataaaacaccaggaggagctcaccgaacttcat
aaaaagagaggggagcttgctcagacagtcatagagctgaacaatcagatgcaacagaag
gacaaggaaatccaagccaatgaagaaaagatagcgaagtacttgcagacaatccaagat
ctggaaactgaatgccaggatttaaggaacaagctgcaagaacttgaacgtgccaatcag
acccttaaagacgagtacgacgctctgcagattacttttactgctctggaagataaatta
cggaagactacagaggacaaccaggaactggtgtctcgctggatggcagagaaagctcag
gaagctaaccggctcaatgcagaaaacgagaaggactcaaagaggagacaggcccgactt
cagaaagagttagctgaagcagccaaggaacctttgtcctttgaacatgatgatgatata
gaggtgctgaatgataatgcagaccctgtgggagacagtgcgggggcacaagccacaggc
cggaacatcagtaagcgaaactctcagcctgccgtaggaggcctcctggactctatcact
aatatcttcggcttgtctgagtctccctccttgagtcatcgttctgacagttccaggaga
cggtctttaaattctttccctgcctcaccggattgtgcagatacccccggagctggaaac
agagaggtcagggttcctgctacagcggtttattcctttgatgcccatgatggagaagtt
aatgctgtgcgattcagcccaggctcccgtttactggcaacaggtggaatggaccggagg
gtgaaactctgggatgtgattggaaataaatgtgaagcaaaaggttctttaacaggcagc
aatgcaggaattaccagcatcgaatttgacagtgctggttcctaccttttggctgcttcg
aatgactttgccagcagaatctggacagtggatgattacaggcttcggcacacgctaact
ggacatagtgggaaagttctatctgccaaattcctactggacaatgcccgcattgtgtct
ggaagtcacgacaggacattaaagctgtgggacctgcgcagcaaagtttgcattaagact
gtctttgctggttctagctgtaatgacatagtttgcacggagcagtgtgtcatgagtggt
cattttgacaaaaagattcggttctgggatataagaacagaatgtattgtgcgggaactg
gagttgcagggcagaatcacggctctagatctgaatcctgaaaggacacagctacttagc
tgctctcgggatgaccttatcaaaatcactgacttgcgtgccaatgctgtgcagcaaacc
ttcagtgccccgggctttaagtgtggatcagactggactcgggttatatttagccctgat
ggcagttatgtgtctgctggttcggcagaaggaacactttacttctggaacgtccttaca
ggaaaagtggagaggatgtttagcaagcaacacagttcctctatcaatgctgtggcttgg
tcaccctctgggacacacgtggtcagcgttgacaaaggaagccgtggagtgttgtggtct
gacttttga
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