Xenopus tropicalis (tropical clawed frog): 550103
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Entry
550103 CDS
T01011
Symbol
nup54
Name
(RefSeq) nucleoporin p54
KO
K14308
nuclear pore complex protein Nup54
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
550103 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
550103 (nup54)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
550103 (nup54)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
ZnuA
Motif
Other DBs
NCBI-GeneID:
550103
NCBI-ProteinID:
NP_001017349
Xenbase:
XB-GENE-948035
UniProt:
Q28DS2
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All DBs
Position
1:complement(81656934..81677243)
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AA seq
536 aa
AA seq
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MAFNFGASTGTPANQGTTGFSLGTFTPKTTTSGFGFGTTTTTASTGFGGGFGGFGTTTTA
STGSAFSFTTPANTTSGLFGATQNKGFGFGTGFGSTTTNTGLGTGLGTGLGFSGFNTSQQ
QQQQQPVIGCGLFNQSVQSTPQSNQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTG
KGFFMNNTPPVEFTQENPFCRFKAVGFSYIPNNKDEDGLISLIFNKKESDIRGQQQQLVE
SLHKVLGGHQTLTVNVEGVKTKADDQTEVIIYVVERSPNGTSRRVGASALFSYFEQAHIK
TNLQQLGVTGAMARTELSPAQIKQLIQNPPSGVDPIIWEQAKVDNPDPERLIPVPMIGFK
ELLRRLEVQDQMTKQHQSRLDIISEDIGELQKNQATTMAKIGQYKRKLMELSHRVLQVLI
KQEIQRKSGFAIQAEEEQLRVQLDTIQSELNAPTQFKGRLNELMSQIRMQNHFGAVRSEE
KYYVDADLLREIKQHLKQQQEGLSHLIGIIKDNLEDIKLIEQGLNDSLHMRTGLLS
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaactttggagccagcactgggacgccggccaaccaaggtacaactggattt
tcacttggcacttttacgcctaagactactacatcagggtttggtttcggtacaactacc
acaactgcatcaacaggctttggaggtggttttggaggctttggaactactacaactgca
tctactgggtcagcttttagcttcactactccagcaaacactacctcaggtctctttggt
gctacacaaaataagggatttggctttggaactggttttggatcaactacaacaaacaca
ggtctaggtactggacttggaacaggtttgggcttcagtggattcaatacatcccagcaa
cagcagcaacaacagcctgtaattggatgtggtcttttcaaccaatctgttcaaagcacg
ccacagtcgaaccaactcataaacactgctagtgctctttctgcgccaactttactcggg
gacgagcgagatgcaatcttggcaaagtggaaccaacttcaggccttttggggaacaggc
aaaggcttttttatgaataatacaccccctgtggaattcacccaggagaatccattttgt
aggtttaaggctgttggtttcagctacatccccaacaacaaagatgaagatggtttgata
tctcttattttcaacaaaaaggaatctgacatccgagggcagcaacagcagctagtggaa
tctctgcataaagtccttgggggacaccaaacattgactgtaaatgtggaaggtgttaaa
acgaaggcagatgaccagacggaagtcataatctatgttgtagagcggtctcctaatgga
acttcaaggcgagttggagccagcgctcttttcagctactttgaacaagcacatatcaag
actaacctacagcagcttggagtcacaggtgcaatggctagaacagaactttctccagca
cagattaagcaactcatacagaaccctccttcaggtgttgatccaattatctgggaacaa
gccaaagtggacaatccagatcctgaaaggcttatccctgttcctatgattggcttcaaa
gagctgctgagaagacttgaagtccaagatcagatgacaaagcaacaccagagcagactt
gatattatttcggaagatattggagaacttcagaaaaaccaagctacaacaatggctaaa
attggccaatacaaaaggaaactaatggaactttctcacagggtacttcaggttttaatt
aaacaagaaatacaaaggaaaagtggatttgctatccaagcagaggaagagcaattacgt
gtacagcttgacacaatccagagtgaacttaatgcaccaacccagtttaagggtagactc
aatgaactcatgtcacaaataagaatgcagaatcactttggagctgtacggtctgaagaa
aaatattatgttgatgcagatcttttgagagagatcaaacagcatctaaaacaacaacaa
gaaggtttgagccatttgatcggcattatcaaagacaaccttgaggatataaaactaatc
gaacaaggactcaatgatagtcttcacatgagaactggactcttaagctga
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