Xenopus tropicalis (tropical clawed frog): 594894
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Entry
594894 CDS
T01011
Symbol
fxr1
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 homolog isoform 1
KO
K15516
fragile X mental retardation protein
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
594894 (fxr1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
594894 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
594894 (fxr1)
mRNA cycle factors
Stress granule specific factors
594894 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
FXR_C3
KH_1
Agenet
KH_2
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
594894
NCBI-ProteinID:
NP_001263426
Xenbase:
XB-GENE-1004708
UniProt:
Q5BJ56
F6YKP8
LinkDB
All DBs
Position
5:complement(108315765..108346324)
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AA seq
674 aa
AA seq
DB search
MEDLAVEVRGSNGAYYKGFVKDVHEDSLTVVFENNWQPERQVPFHEVRMPPLPDIKKEIT
EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPGNQNKS
VTKSSFFKCTVDVPEDLREPCSNENVHKEFKKAVGACRVYFHAETNQLIILSACESTVKR
VTILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
IQQARKVPGITAIELDEDSGTFRIYGESAEAVKKARSYLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNETKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMGFRPSSSRGTEKEKGYATDESTASSVRGSRSYSGRGRGRR
GPNYTSGYGTNSELSNPSETESERKEELSDWSLAGEDERESRQQRDSRRRPGGRGRSGSA
GRGRGGSRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHNTNRRRRSRRRRT
DEDSSLMDGMTESDNASVNENGLDDSEQKPQRRNRSRRRRFRGQAEDRQPVTVADYISRA
ESQSRQRNLPKEPLAKGKKEKVKDVIEEHGPSEKVINGPRAASADKASKPQTTERNKASC
QDGSKQEAILNGVS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaggacctggcggtggaagtgcgcggctctaacggagcttactacaagggatttgtc
aaagatgtacatgaagattccctcacagttgtttttgaaaacaactggcaaccagagcgt
caggtgcctttccatgaggtccggatgcctcctctcccagatattaaaaaggaaattact
gaaggagatgaggtagaggtgtactcccgagccaatgaccaagaaccttgtgggtggtgg
ttagcaaaagtacgaatgatgaaaggagagttttatgttattgaatatgctgcttgtgat
gctacctacaatgaaattgtaacatttgaacggctgcgacctggaaaccagaataaaagt
gtaacaaagagctccttcttcaaatgtacagtggatgttcctgaagatttaagagaaccg
tgttctaatgaaaacgtgcataaggaattcaagaaagctgtaggagcctgccgagtttat
tttcatgcagaaactaatcagctgataatactgtctgcatgtgaatcaactgtaaagaga
gtaaccatattgagcgacatgcatttgagaagtattcgcaccaaactgatgcttatgtca
agaaatgaagaggccacaaaacatttagaatgtacaaaacagcttgcagcagcatttcat
gaagaatttgttgtccgggaagatttaatgggtctggcaatagggacacacggaagtaat
atccaacaagctcggaaggttccaggtatcactgctattgagttagatgaagatagtggc
acatttcgaatttatggggagagtgcagaagcagttaaaaaagccagaagttacttggag
tttgtggaagatttcattcaagtacctagaaatcttgtaggaaaagtaattggcaaaaat
ggaaaagtcattcaagaaattgttgataaatctggagtcgttcgagtcagaatcgaggga
gacaacgaaacaaagttaccccgtgaagatggtatggttccatttgtttttgttggaacc
aaagagagcattggtaatgtacaggttcttctggaatatcacattgcatacttaaaggag
gtagagcaacttagaatggaaaggctacagatcgatgagcaacttcgccagattggtatg
ggcttcagaccttcttctagcagaggaacagaaaaagaaaaaggatatgcaactgatgaa
agcactgcttcatctgtccgtggaagcaggtcctacagtgggaggggcagaggccgccgg
ggcccaaattatacatctggttatggtacaaattctgagctctccaatccttctgagact
gaatcagaaagaaaggaggaactgagtgactggtcactagctggggaagacgagcgtgaa
agccgccaacagcgtgacagccgaaggcgtcctgggggtagaggacgtagtggatctgct
ggtcgcggtcggggaggatcaaggggtggcaagtcttctatcagctctgttcttaaggat
cctgacagcaacccatacagcctacttgacaacacagaatctgaccagactgctgacaca
gatgcaagcgagtctcaccacaacacaaaccgtcgaaggagatcaaggaggaggaggacc
gatgaggattcctcactaatggatggaatgacagagtcagacaatgcatcagttaatgaa
aatggcttggatgatagtgagcaaaaaccccagcgacgcaatcgtagccgcaggcgtcgc
ttcaggggtcaggcagaagatagacagccagttacagtggctgactatatttctagagca
gaatctcaaagccggcagcggaatctacctaaagaacctttggcaaaaggcaaaaaagaa
aaggtgaaggatgtcattgaagagcacggaccttcagaaaaagtcattaatggcccaaga
gctgcttctgccgacaaggcttcaaagccacagaccacagaaagaaacaaagcaagctgt
caagatggaagtaaacaagaagccatactgaatggggtgtcttaa
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