KEGG   Xenopus tropicalis (tropical clawed frog): 594941
Entry
594941            CDS       T01011                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    594941 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xtr03041]
    594941 (snrnp40)
Spliceosome [BR:xtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    594941 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    594941 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 Beta-prop_IFT140_2nd WD40_like Beta-prop_Nup120_160 WDR54
Other DBs
NCBI-GeneID: 594941
NCBI-ProteinID: NP_001025544
Xenbase: XB-GENE-957415
UniProt: Q5BL75
LinkDB
Position
2:79151275..79157313
AA seq 337 aa
MIEQNKRKGMELVPVQAKKPRNELVVSGPPRSSSLQAPIMLLSGHEGEVYCCKFHPNGVT
LSSAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSLLFSASTDKTVAIWDCET
GERVKRLKGHTSFVNSCYPARRGPQLICTGSDDGTVKLWDFRKKAAVQTFQNTYQVLSVT
FNDTSDQIISGGIDNDIKVWDLRQNKLMYTMRGHGDSVTGLSLSSEGSYLLSNAMDNTVR
VWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADRFVYVWDTTSRRIL
YKLPGHAGSVNEVAFHPEEPIILSAASDKRLYMGEIQ
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgatcgagcaaaacaagcggaagggaatggagttggtgccggtacaggcaaaaaaaccg
aggaacgagttggtggtttcgggtcccccaagatcatccagtcttcaggctcccatcatg
ctgctttctggtcatgaaggagaagtttattgctgcaaatttcatcccaatggtgtaact
ttgtcttctgcaggatttgacagacttatcttgctatggaatgtatatggcgactgtgac
aattatgcaactttgaaaggacatagtggagcagtgatggagcttcattacaatacagac
gggagtctgctattctctgcatcaactgataaaactgttgctatttgggactgtgaaaca
ggcgaaagagtaaagaggttaaagggacatacatcatttgtaaattcatgttacccggca
aggaggggaccgcagttaatatgcacagggagtgatgatggcacagtaaagctgtgggac
ttcaggaaaaaggctgcagtacagaccttccaaaatacataccaggtactatctgtcaca
ttcaatgacaccagtgaccagatcatctcaggaggcattgacaatgacatcaaggtatgg
gacctgcgacagaacaagcttatgtacacaatgagaggtcatggtgactctgtgacaggg
cttagccttagttctgagggctcctatcttctgtccaatgctatggacaacacagtacgt
gtttgggatgttcgtccttttgccccaaaagagagatgtgtgaagatatttcaaggaaat
gtgcacaattttgaaaagaacctgttacgttgctcctggtctgctgatggaagcaaaata
gctgcaggatcagcagacagatttgtttatgtttgggatactacatcacgtcgaattctt
tacaaacttcctggtcatgctgggtctgtaaatgaggtagcttttcaccctgaggagcca
attattctttctgccgctagtgacaaaagattgtatatgggggagatccagtga

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