Xenopus tropicalis (tropical clawed frog): 594953
Help
Entry
594953 CDS
T01011
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082
ATP-dependent chromatin remodeling
xtr03083
Polycomb repressive complex
xtr04110
Cell cycle
xtr04330
Notch signaling pathway
xtr04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
594953 (hdac1)
03083 Polycomb repressive complex
594953 (hdac1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
594953 (hdac1)
04350 TGF-beta signaling pathway
594953 (hdac1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
594953 (hdac1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
594953 (hdac1)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
594953 (hdac1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
594953 (hdac1)
HDAC complexes
Sin3A-HDAC complex
594953 (hdac1)
BRAF-HDAC complex
594953 (hdac1)
REST complex
594953 (hdac1)
SHIP complex
594953 (hdac1)
MiDAC complex
594953 (hdac1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
594953 (hdac1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
594953 (hdac1)
Chromatin remodeling factors
NuRD complex
594953 (hdac1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
594953
NCBI-ProteinID:
NP_001025564
Xenbase:
XB-GENE-479583
UniProt:
Q5BL48
LinkDB
All DBs
Position
2:complement(86418880..86432238)
Genome browser
AA seq
480 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPIKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
SVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVMSKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGG
GGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEF
SDSEDEGEGGRRNVASFKKVKRVKTEEEKDGEEKKDVKEEEKPKDEKTDSKRVKEETKSA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagtcaaggaacaaagaagaaagtgtgctattactatgatggtgatgttgga
aattattattatggacaggggcatcccataaaacctcatagaattcgtatgacacacaac
ctgctgctgaactatggactttaccggaaaatggagatctatagaccccacaaagccagt
gcagaagagatgacaaagtatcacagtgatgattatataaaattcctgcgctccatacga
ccagacaatatgtccgaatacagtaaacagatgcagagatttaatgttggtgaggactgt
ccagtgtttgatggcttgtttgaattctgccaactctccacggggggctctgtagcaagc
tctgttaaactaaacaaacaacagacggacatttcagtaaactggtctggtggccttcat
catgccaagaaatctgaggcatctggtttttgttatgtcaacgatattgtccttgccatc
ctggaactattgaagtatcaccagagagttctgtatattgatatagacattcaccacggt
gatggtgtggaggaggccttttacacaactgatagagttatgacagtatccttccacaag
tatggagagtattttcctggaactggtgatctgagagatattggtgcagggaaaggcaaa
tattatgctgtgaattatcccttacgggatggaattgatgatgagtcctatgaagcaatt
tttaaaccagtaatgtctaaagttatggagatgtaccagcccagtgcagtggtcctacag
tgtggagcagattccttatccggggatagacttggatgtttcaatttgaccatcaaagga
catgccaagtgtgtggagttcataaagacctttaacttgccactgcttatgctaggaggt
ggaggttacactatcaggaatgtggctcgttgctggacatatgaaacagctgtggctctg
gactctgagatccctaatgagcttccatacaatgattattttgaatattttgggccagac
ttcaagcttcatatcagtccatccaacatgaccaatcagaacactaatgaatatctggag
aaaatcaagcagcgcctttttgagaacttgcgcatgcttcctcatgctccaggagtccag
atgcaagccatcccagaggactctgtacatgatgacagtggtgaagaagatgaggaagat
cctgacaagcgcatttccattcggtcatcggataaaaggattgcgtgtgatgaggagttc
tctgattctgaagatgaaggggaaggaggtcgcagaaacgtggccagtttcaagaaagta
aaacgggttaaaacagaggaggaaaaggatggagaagaaaagaaagatgttaaagaagag
gagaaacctaaagatgagaagacagacagcaaacgggtaaaagaagagaccaaatctgcc
tga
DBGET
integrated database retrieval system
