Xenopus tropicalis (tropical clawed frog): 595050
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Entry
595050 CDS
T01011
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
595050 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
595050 (exosc2)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
595050 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
595050 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
595050
NCBI-ProteinID:
NP_001025658
Xenbase:
XB-GENE-977773
UniProt:
F6RNA7
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Position
8:complement(12895694..12910194)
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AA seq
293 aa
AA seq
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MAVEVRLPAAQKRVSEELGTGSGLHLVTPGDTITTDTGFMRGHGTYTEDDKLVASVAGVV
ERVNKLICVRALKARYNGEVGDIVVGRITEVQQKRWKVDTNSRLDSVLILSAVNLPGGEL
RRRSAKDELAMRDYLQEGDLISAEVQAVYSDGALSLHTRSLKYGKLGQGVLVRVSPSLIK
RRKTHFHNLPCGASIILANNGFIWLCATPKEMEEEAGGFITNLEPVALSDREVISRLRNC
ILALASQKMLLYDTSVLYCYEASLAHQIKELLKVEVIEDIVMETRQRLLEQEG
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaagtacggttgccggcggcacaaaagcgcgtcagtgaggagctaggaacg
gggagcggcctccatctagtcacccccggggacaccatcactaccgacaccggattcatg
aggggccatggaacatacacagaagatgataagctggtggcttcggtggccggtgtcgtt
gagcgcgtcaacaaactgatatgtgttcgagccctaaaagccaggtacaatggagaagtc
ggggatatagttgtcggccgtataacagaggtgcaacagaagagatggaaggttgatacg
aatagtcggttggactctgtgttaatactttctgctgttaatcttcctggaggggaactg
aggaggaggtcggctaaggacgagctggccatgcgcgattacctgcaggagggagacctg
atcagcgcggaggtccaagctgtgtactcggatggggcactgtctctgcacacaagaagc
ctgaagtacggcaaacttgggcagggggtgctggtccgggtgtccccttcgctcatcaag
agacgcaagacgcacttccataatctgccctgtggagcctccatcatcttggccaacaat
gggttcatctggctctgtgctacccctaaggagatggaggaagaggctgggggctttatc
accaacctggagcctgtagcattatctgaccgggaagtgatttctcgcctgaggaactgc
attctggccctggcttctcagaagatgttactgtatgataccagcgtcctctattgctat
gaagcttcattggctcaccagatcaaagagctattgaaagtggaggtgatagaagacata
gtgatggagacccgacagcgcctcctggagcaggaaggttaa
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integrated database retrieval system
