Xenopus tropicalis (tropical clawed frog): 595066
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Entry
595066 CDS
T01011
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xtr03016
]
595066 (rtcb)
Enzymes [BR:
xtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
595066 (rtcb)
Transfer RNA biogenesis [BR:
xtr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
595066 (rtcb)
Prokaryotic type
tRNA splicing ligases
595066 (rtcb)
BRITE hierarchy
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Ortholog
Paralog
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Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
595066
NCBI-ProteinID:
NP_001025674
Xenbase:
XB-GENE-974751
UniProt:
Q561P3
LinkDB
All DBs
Position
3:7499366..7508336
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIRKGFVPNMQVEGVFYVNDPLEKLMFEELRNASRGGAAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMDNPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARISS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKEKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTDQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADLGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaatgacgagttacagtatctggacaagatccataagaactgctgg
cggatccgcaagggcttcgtgcccaacatgcaggtagaaggggtgttctatgtgaatgac
cccctggagaagctgatgttcgaggagctgaggaatgccagccgggggggagccgccgga
ggtttccttcccgccatgaagcagatcggcaatgtggcggctttacctgggatcattcat
agatctatcgggctaccagatgtgcactctggctatggatttgccatcggaaacatggca
gcgtttgatatggacaaccccgaagcagttgtctccccaggtggtgttggctttgacata
aactgcggggtccgcctgcttcgtacaaacctcgatgagagcgacgtgcagccggtgaaa
gagcagctggcccaggccatgttcgaccatatcccagtaggggtcggatccaaaggggtc
atccctatgggggccaaggatctggaggaagccctcgagatgggggtggactggtcgctg
cgagaaggctacgcctgggccgaggacaaggagcactgcgaggagtatggccgcatgttg
caggctgaccccagcaaggtctcctctaaagcgaagaagcgagggctgcctcagctgggg
accctcggagctggaaaccattacgccgaagtccaggtggtcgacgacatatacgacgag
tatgccgccaagaaaatgggcatcgaccacaaggggcaagtgtgcgtcatgatccacagc
ggcagccgcggcttggggcatcaagtggcgacagatgctctggttgccatggagaaagcc
atgaagagggacaagatcacggtgaacgatcgccagttggcctgtgcccgcatctcctcg
gccgaggggcaagattatctcaaaggcatggccgccgcgggcaactacgcttgggtcaac
cgctcctccatgaccttcctgaccagacaggccttctccaaagtgttcaacacgactccg
gacgacctggacttgcacgtcatctacgacgtgtcccacaacatcgccaaggtggagcag
cacgtggtggacgggaaggagaagacactgttggtgcacaggaaggggtccacgcgtgct
ttccctccccaccaccccctcattcctgtggattatcagttgactgggcagccggtattg
attggtggaaccatgggaacctgcagttatgtccttactggcactgaccagggcatgact
gagacatttggcactacctgccatggcgctggtcgtgccctttccagagccaagtcaaga
agaaaccttgatttccaagatgttctagacaaactggcagacttgggcatcgccattcgc
gtggcttctccaaaactggtcatggaagaggcccccgagtcgtacaagaacgtcacggac
gtagtaaatacctgccacgatgccggcatcagcaagaaagccatcaagctccgccccatt
gcggtcatcaaaggctga
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