Xenopus tropicalis (tropical clawed frog): 595074
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Entry
595074 CDS
T01011
Symbol
nelfcd
Name
(RefSeq) negative elongation factor C/D
KO
K15181
negative elongation factor C/D
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
595074 (nelfcd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xtr03021
]
595074 (nelfcd)
Transcription machinery [BR:
xtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
NELF complex
595074 (nelfcd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TH1
Motif
Other DBs
NCBI-GeneID:
595074
NCBI-ProteinID:
NP_001025682
Xenbase:
XB-GENE-995867
UniProt:
Q566L2
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All DBs
Position
10:3060579..3070082
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AA seq
582 aa
AA seq
DB search
MDAEFFMGGAGGIIGDWEDRGMDEDYGEGEDDGEVQQECLRKFTTRDYIMEPAVFNTLKR
YFQSGGSPENVIQLLSENYSAVAQTVNLLAEWLIHSGVEPAQVQETVENHLKSLLIKHFD
PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI
TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAIMSIL
SQEEQGGSAMRRIAQEVQRFAHEKGHDVSQITLALGSAASYPRACQALGAMLSKGALNPA
DITVLYKMFTSMDSPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVE
TWKKNKRVNINKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVL
KWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVME
QLELKKTLLDRMVHLLSRGYVLPVVTYIRRCLEKLDTDISLIRYFVTEVLDVIAPPYTAD
FVQLFLPILENDSIAGTIKAEGEHDPVTEFIVHCKSKFIMIN
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggagtttttcatggggggggcgggagggattattggggactgggaggacagg
ggaatggatgaagactatggggaaggggaggatgatggggaggtgcaacaggagtgtttg
cggaaattcaccacccgggattatatcatggaacctgctgttttcaacacactgaagagg
tacttccagtcgggggggtccccagaaaatgtcatccagctcctgtcggagaattacagc
gccgtggcgcagactgtgaatctgctggcggaatggctcatccactcgggtgtggagccc
gcgcaggtacaagagacggtggaaaaccatctgaagagtttactgatcaaacacttcgac
ccaaggaaagccgactccatctttacagaggaaggagagacgccggcctggctggagcag
atgatcgcccacaccacatggagagatctgttctacaaactggcagaggcccatcccgac
tgcctgatgctgaacttcactgtcaagctgatctcggatgccgggtaccagggggaaatc
accagcgtctccacggcgtgccagcagctggaagtcttctccagggtcctccgtacttcc
ctggcaacgatcctggatgggggagaagagaacttggagaaaaacctccccgaattcgca
aagatggtgtgtcacggagagcacacgtacttgttcgctcaggccatcatgtccatcctg
tcgcaggaggagcagggggggtcggccatgagaaggatcgcacaagaggtccagagattt
gcacatgaaaagggccatgatgtcagtcagatcacattggctttgggctctgccgcttcc
taccctcgggcctgtcaggcgctgggggccatgctgtccaagggggccctgaatccggcc
gacatcactgtgctctacaagatgttcacaagcatggactcccctcctgtagagctgatc
cgcgtgccggccttcctggatctcttcatgcagtcgctgttcaaaccaggcgccaaaata
aaccaggaccacaagcacaagtacatccatatcttggcctacgccgccagcgtggtggaa
acgtggaaaaagaacaagagagtgaacattaacaaggatgagctgaagtcgacctctaaa
gccattgagaccgtccataacttgtgctgcaatgagaacaagggggcgtcggagctggtg
gccgagctgagcaccctgtaccagtgcatcaggttccctgtggtagccatgggcgtattg
aaatgggtcgactggacggtgtcagaaccgcgctacttccagctgcagacggatcacacc
cctgtgcacttggcgctactagatgagatcagtacgtgccaccagctgctccacccgcag
gtcctccagctgctcgttaaactctttgagacggagcactcgcagctcgatgtcatggag
cagctggagctgaagaagacgctgctggaccggatggttcacctgctgagccgcgggtat
gtccttcctgtggtcacctatatccgccggtgcctggagaaactcgataccgacatctcc
ctcatccgatacttcgtcacagaggtcctggatgtcattgcacctccctacaccgcggat
tttgtgcagcttttcctccccatcctggagaacgacagcattgccggcaccatcaaggca
gaaggggaacacgacccggtgacggagtttatagttcactgcaaatcgaaattcatcatg
ataaactga
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