Xenopus tropicalis (tropical clawed frog): 595087
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Entry
595087 CDS
T01011
Symbol
fn1
Name
(RefSeq) fibronectin precursor
KO
K05717
fibronectin 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04510
Focal adhesion
xtr04512
ECM-receptor interaction
xtr04810
Regulation of actin cytoskeleton
xtr04820
Cytoskeleton in muscle cells
xtr05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
595087 (fn1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
595087 (fn1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
595087 (fn1)
04810 Regulation of actin cytoskeleton
595087 (fn1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
595087 (fn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
595087 (fn1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xtr04147
]
595087 (fn1)
00536 Glycosaminoglycan binding proteins [BR:
xtr00536
]
595087 (fn1)
04990 Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
595087 (fn1)
Membrane trafficking [BR:
xtr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
595087 (fn1)
Exosome [BR:
xtr04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
595087 (fn1)
Glycosaminoglycan binding proteins [BR:
xtr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
595087 (fn1)
Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
595087 (fn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
fn2
Fn3_Dep-1_2nd
NDNF
FN3_Tor_3rd
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
595087
NCBI-ProteinID:
NP_001025695
Xenbase:
XB-GENE-484447
UniProt:
Q501R6
LinkDB
All DBs
Position
9:complement(58703761..58749469)
Genome browser
AA seq
2475 aa
AA seq
DB search
MRWGALTGLLLALCLCAVVRSAPSSKKRRQAQQQQVVQPHGSPDSQQKGCYDNGKYYQIN
QQWERTYLGNTLVCTCYGGGRGFNCESKPESEETCFDKYTGVTYRVGETYERPKDNMIWD
CTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPV
AERCYDNTAGISYVVGQTWEKPYQGWMMVDCTCLGEGSGRITCSSKNRCNDQDTRTSYRI
GNSWSKTDTRGNLLQCICTGNGRGEWKCDRHSSAQATGTGSNPITNIQTTLFQPDSELEP
YGHCVTDNGVLYSLGMRWLKAQGSKQMLCTCLGNGVSCEETVETITFGGNANGEPCAIPF
THDGKTYYSCTGEGRQDGKLWCATTSNYDTDKKYSFCNEQRALVQTRGGNSNGALCNFPF
LYNNRNYTDCTSEGRRDSMKWCGTTANYDADQKFGFCPMAAHEEICTTNEGVMYRVGDQW
DKQHDQGHMMRCTCVGNGRGEWTCVAYSQLKDQCIVDGITYDVNSSFTKRHEEGHMMNCT
CYGQGRGRWKCDAIDQCQDTETRQFYQIGDSWEKHLQGVRYQCYCYGKGIGEWHCQPLST
SPAGTGPVQVIITESSNFPNSHPIQWNAPQPSHIKNYILRWKPKLKTGPWKQATIPGHLN
SYTISGLKPGILYEGQLISILQYGNREVTTFDFTTTSTIHRSSQTETGETTPLPPLVATS
ESVTEITASSFLVSWVSASDTVSGFRVEYELSEDGDEKRYLELPNTATSVSIPDLLPGRR
YNVNVYQITEEGEKSLILSTTQTTAPDAPPDHNVENVDDTSILIKWTKPQAPVTGYRVVY
SPSVEGSSTELNLPSTATSVSLTELLPGIEYNITIYAVEDSLESVPIFIQQGTTGTPQTV
IVPSPTDLQLVEVTDIKITIMWNPPQSEVSGYRVVVKPVSPSDRDVQNLPVSRNTFAEVV
NLHPGRTYTFEVYAVNRGQESEPLAGDFTTKLDAPSDLQFTDVTDSTVVIIWRPPQAKIG
RYLLSVGQTRGGQPSQFHINPSATNHKLESLSPGTEYTISLVALKGNQQSASTTGVFSTL
EPVGSIPPYNTEVTETTIVVTWTPVPRIGFKLDVRPSQGGEAPREVISESGSIVISGLTP
GVEYMYSISVLKDGVERDIPITKTVVTPVAPPTNLRLQPSRDSATLTVYWDSSISPGITG
YRITTAPTPMQVGNSLEEEVGPTQTYCLFENLSPGVEYNVSVYAVKGEEESSPLSQIFLQ
EIPQLTDLKYDDVTDTSIDLRWTPLNSSTIIGYRITVVAAGESVPIYEEFVGPTDGYYKV
SGLEPGIDYEISVITLISGGESAPTTIVQHTAVPPPTNLRFTNVGPDTMRVTWSPPTSIE
LSSFLVRYSPVKKPDDVTELSLSPSTNMVVLSNLLPFTEYLVSVHSVYEERESSALNGVA
KTYLDSPTGIDFSEITPNSFTVHWIAPRAPITGYRIRYQLESGAGRPKEERVPPSRNSIT
LTHLIPGSEYIVSIIAFNGQQESLPLSGQQATVSDVPTDLEVTSSSPNTLTISWEAPSVN
VRYYRITHSQTGGHGPEKEFTVPGTSNTATIRGLNPGVSYTITVYAVTGRGDSPASSKPL
TIVHMTDVDQPTDMAVTDIQDHSIHVKWSPPPGPVTGYRVTSVPKSGQGETFSQVVSPDQ
TEVTIVGLQPAVEYVVSIYSQGENGESEPLVETAVTNIDHPKGLTFTDVGVDSIRLAWEV
PDGQVTRYRVTYSSPEEGVKELFPAPEGDDDTAELHGLRPGTEYTVSIVALHDDMESKPM
IGIQSTAIPAPTNLQFSQVTPSGFSLSWHAPTIHLSGYLVRVNPKEKTGPMKEVRLSPGV
TATTVTGLMVATKYEVNVYALKDTLTSQPLQGLISTLDNVSPPRRPRVQDVTETTVTLSW
RTKTETITGFQIDAIPAGGQNPIRRTVDADLRSFTITGLQPGTDYKIYLYTLNDNARSSP
VIVDVTTAVDSPSNLRFLTTTSNSLLFTWQPPRARITGYIIRYEKAGGLLKEHLPRLQAG
TTESTITNLEPGTEYIVYIIAVRNNQKSEPLVGRKRTDELPRLVTLPHPGKGPEILDVPT
DEENTPHITQIKLDNGNGIQLPGSNGQQPSSGNEGQLIEEHGFRSPLAPTTAVPVRPGKF
TPGHYPQERVDIELDTEFPVQRGDLDGPYPHGLGPQLNDSGVQEVASHTTISWRPELETT
EYIISCHPIEHDEAPLQFRVPGTSSSATLNGLTQGATYNIIVEAQKGSDKHKVFEKRVTV
GSPGSPEGVLQPAEDTCYDTFNGAHYSVGQEWERMSESGFRLWCKCLGYGSGHFRCDSSK
WCHDNGVNHRVGEKWDRRGENGQMMSCTCLGNGKGEFKCEPHEATCYDEGKMYNVGEQWQ
KEYLGAICSCTCYGGQQGWRCDNCRRPGAVLPDGTAGHTVSQFAQRYQQNYNLNCPIECY
LPLQADIQHSEQTQK
NT seq
7428 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggggggccctgaccgggctgctcctagccctgtgcctgtgtgcagtggtacgt
tccgccccatcaagcaagaagcgcaggcaggcgcagcagcagcaagtagtgcaaccccat
ggatcaccggacagccagcagaaaggatgttatgacaatggcaagtactaccaaatcaac
cagcaatgggagcgcacctacctagggaacacactggtgtgtacttgttatggcggaggc
agaggtttcaactgcgaaagcaaaccagagtctgaagagacctgctttgacaaatacact
ggtgttacttaccgggtcggtgaaacatatgagcgaccaaaggataacatgatctgggac
tgtacgtgtattggagctggaaggggacgcattagctgtacaattgcaaatcgttgccat
gaaggaggtcagtcttataagattggggacacctggcgcaggccacatgaaactgggggg
tatatgctagaatgtgtctgccttggaaatggtaaaggagaatggacctgcaagcccgtt
gctgagagatgctatgataacacagctgggatatcctatgtagttggtcagacctgggaa
aagccttatcagggctggatgatggtggactgtacatgcttgggagaaggcagtggacga
atcacatgttcttccaaaaacagatgcaatgaccaggacaccagaacttcttatagaatt
ggaaattcatggagtaagactgacaccagaggaaatctcttgcaatgtatctgtactggc
aatgggcgaggagagtggaaatgtgatagacattcctctgcacaagcaactggtactggc
tcaaaccccatcacaaacattcaaactaccctcttccagcctgattcagagctggagccc
tatggtcactgtgtgactgacaatggggtcttgtattctttgggtatgagatggctgaag
gcacagggcagcaagcagatgctctgtacctgccttggtaatggtgtgagctgtgaagaa
actgttgaaaccatcacatttggtggtaatgccaatggtgagccatgtgccattcctttc
actcatgatggcaagacctattattcctgcacaggagagggtcgtcaggatggaaaattg
tggtgtgcaacaacctccaactatgacactgacaagaagtattcattctgcaatgagcag
cgtgcacttgtacagacacgtggtggtaactccaatggagctctttgcaactttccattt
ttgtacaacaaccgcaactatacagactgcacctctgaaggtcggagggacagtatgaag
tggtgcgggactactgccaactatgatgccgatcaaaaatttggattctgtcccatggca
gctcatgaggaaatatgcactactaatgagggagtcatgtatagagttggtgatcagtgg
gacaagcagcatgatcaaggccacatgatgcgatgtacttgtgttggaaatggtcgtggg
gaatggacttgtgtggcttattctcagcttaaagaccagtgcattgtggatgggataact
tatgatgtgaacagttcttttacgaaacgccatgaggaaggacacatgatgaactgtacc
tgctatgggcagggtcgtggcagatggaagtgcgatgctatagaccaatgccaggatact
gaaacccgacagttctatcagattggagattcctgggaaaagcatttgcagggagtacgg
taccagtgttactgctatggcaaaggaattggtgaatggcattgccagcctctatcaaca
tccccagctgggactggacccgttcaggttattatcacagagagttccaatttccctaat
tctcaccctatacagtggaatgccccacagccatcacacattaagaattacatcctgcgc
tggaagcctaaactgaagactggcccatggaaacaagccactattccaggacacctgaac
tcttataccatctctggcttgaaacctggaatcctgtatgaggggcaattgatcagcatt
ctgcagtatggaaacagggaggtcacaacctttgactttaccaccacttctaccattcac
cgctccagtcaaactgagacaggagaaactaccccacttccaccattggtggccacatct
gagtctgtaacagaaattactgctagcagttttctggtatcctgggtctctgcatctgac
acagtgtctggcttccgtgttgaatatgagctgagtgaggatggagatgagaaacgctac
ctagaacttccaaacactgccacttcagtcagtatcccagacctcctcccaggccgtaga
tacaatgtgaatgtgtatcagataactgaagagggtgaaaagagcctcatcctatcaact
actcagacaactgcacctgatgcaccccccgaccataatgtggaaaatgttgatgacacc
tccatcctgatcaaatggaccaaacctcaagctcccgtcacaggatacagggttgtatac
agtccatctgtagaaggcagcagcacagagttaaacctcccaagtactgcaacttcagtg
agcctgactgagctgctcccaggaattgaatacaatattacaatctatgcagtggaagac
agtttagaaagtgttcccatctttattcagcaagggacaactggaactccacagacagtt
atagtaccatctcccactgacttacaattagtggaagttaccgatataaaaattaccatc
atgtggaaccccccacaaagtgaggtttctggataccgagttgttgtgaaacctgtaagt
ccctctgaccgtgatgtgcagaatctccccgtgagcaggaacacttttgccgaggtggtt
aacttgcaccctggcaggacctatacctttgaggtgtatgcagttaatcgtggacaagag
agtgaacccctggctggagacttcactaccaaactcgatgctccatcagacttgcagttt
acagatgtaactgactctacagttgttattatctggagaccaccccaagccaaaattggt
cgttacctgctgtctgtaggtcaaacccggggaggccagccgagccaatttcacattaac
ccctctgccacaaaccacaagctggagagtctctccccaggcacagagtacaccatttca
cttgttgccctcaaaggcaatcagcaaagtgctagcactactggtgtcttttcaacattg
gaacctgtgggatcaattccaccttacaacactgaagtcacagagactaccatagtggta
acttggacccctgtgcccagaatcgggtttaagctggatgttcgacccagccaaggtggg
gaggcacctcgggaagtcatatccgagtctggcagcattgtgatctctggcctaacccct
ggagtcgaatatatgtacagcatatctgttcttaaggatggcgttgagagggacattccc
atcaccaagactgttgtcacacctgtcgctcctccaaccaacttgcgcctccaaccaagc
agagattctgctacacttactgtttactgggacagtagcatttcaccaggaatcactgga
tacagaattaccactgcacccactccaatgcaggttggcaattccctggaagaggaggtt
ggtccaactcagacatactgcctctttgagaacctgagccctggtgtagagtacaatgtc
agcgtgtatgcagtaaaaggggaagaggagagttcacctctctcccagatctttcttcaa
gagataccccaactgactgacctaaagtatgacgatgtaactgacacaagcattgacctg
aggtggacgccccttaattcctccaccattatcggctaccgaatcacggtggttgcggcg
ggagaatccgtccctatctacgaggaatttgtgggccccacagatgggtattacaaagtt
tcaggattggaacccggcattgactatgagatcagcgtgataacacttattagcggcgga
gagagcgccccgaccacaatcgtacagcacacggctgttccacctccaactaatttgcgc
ttcaccaatgttggccctgacaccatgcgcgtcacctggtcacctccaacttctatcgaa
ctatcaagtttcctggtacgatattctcccgtgaagaagccagatgatgtgacagaactc
tccctctctccatctaccaacatggtggttttatcaaacttgcttcccttcaccgaatat
ttagtcagcgttcattctgtttatgaggagcgagagagtagtgccctcaatggtgtagct
aagacttacttggactctccaactggcattgacttttctgaaattactcccaattcattt
actgtgcactggattgctccacgtgcccctatcactggctacagaattcggtaccagtta
gaaagtggagctgggcgacccaaggaggagcgggtacctccatcccggaactctattacc
cttacccacctcattccaggttcagaatacattgtcagtatcattgcattcaatggtcaa
caggagagtttgccactttctggacagcaagccactgtatctgatgtcccaactgatttg
gaagtgacctcctcctctcctaacacactcaccatctcttgggaagcaccttcagtgaat
gtacgttactacaggatcacccattcccagacaggaggtcatggtccagagaaggagttt
acagttccaggaacatccaacactgcaaccatcagagggttaaatccaggagtaagctac
accatcactgtttatgcagtgactgggcgaggggatagtcctgcctctagcaaaccactt
accattgttcacatgacagatgttgaccaaccaactgacatggctgtcacagatatccag
gatcacagcattcatgtcaaatggtctcctcctccaggcccagtcactggttacagggtc
actagtgtcccaaaaagtggccaaggagaaaccttttcccaggtcgtttctccagatcaa
actgaagtgacgattgtgggcctgcaaccagctgtggagtatgtggtgagcatatactca
caaggtgaaaatggcgagagcgagcctctggttgaaactgcagttacaaacattgaccat
cccaaaggactgacattcactgatgtgggtgttgattccattagactggcttgggaggtc
ccagatgggcaggtcacccgctacagggttacctactcaagtcctgaggagggagtaaaa
gagttgttcccagctccagaaggggatgatgacacagcagaattgcacggtctgaggccg
ggcacagaatacactgtgagcatcgtggcattgcacgatgacatggagagcaagccgatg
attggaatccagagcacagcaattccagcaccaacaaatcttcagttctctcaagtgaca
ccaagtggcttctctcttagctggcatgcacccactatccatctcagtgggtaccttgta
cgtgtcaaccctaaagagaaaactgggcctatgaaggaagttagactttcacctggtgtg
actgctacaactgtaactggtctgatggtggccacaaaatatgaagttaatgtgtatgct
cttaaggataccctgacaagtcagccactgcagggtttaatctctacacttgataatgta
agtccacctcgaagacctcgtgttcaagatgtgaccgagaccacagttacactgtcctgg
cgcactaaaacagagaccatcactggcttccagattgatgctatacctgccggaggtcag
aatcccatcaggagaacagttgatgcagatctccgttcttttactatcacaggtctgcag
cctggcacagactacaagatctatctgtacaccctaaatgacaatgctcgtagctctcct
gtgattgttgatgtcaccacagctgtggactctccatccaacctgcgtttcctgaccaca
actagcaactccctgctgttcacttggcagccacctcgtgctcgcatcactggctatatc
attcgttatgagaaagctggagggctactgaaagagcacctcccacgcctccaagcagga
accacagagtctaccattaccaacctggagccaggcacagaatatattgtctatattatt
gctgtgagaaacaatcagaagagtgagcctcttgtgggacgtaagagaacagacgaactg
cctcgcctggttacacttccacacccgggcaaaggccctgaaatccttgatgttcccact
gatgaagagaacacaccccacatcacacaaatcaagttggacaatggtaatggtatccaa
ctgccaggctctaatggacagcagcccagttctggcaatgaagggcagcttatagaagaa
catggtttcagaagtccccttgcacccactactgctgtgccagtgaggccagggaaattc
acccctgggcactacccacaggagagggttgatattgagctagacacagagttccctgtg
cagcgtggagatcttgatggtccttaccctcatggcttaggaccacagctaaatgattct
ggcgtccaagaagtggcatcccatactaccatttcatggagacctgagctggaaaccact
gaatatatcatctcttgccatcctattgaacatgatgaggccccattgcagtttagggtc
cctggaacctcctctagtgccacattaaatggtctgactcaaggagccacttataacatc
attgtggaagcgcagaaggggtctgataaacataaggtcttcgagaagcgtgtaactgtt
ggcagtcctggttcccctgagggggttttacagccagctgaggacacctgttatgacaca
ttcaatggagcacactattctgtgggacaggaatgggaacgcatgtcagaatctggattc
aggctctggtgcaagtgcctgggctatggaagtggacacttcagatgtgactcctccaaa
tggtgccatgataatggtgtcaatcacagggtcggggagaaatgggaccgacgaggagag
aatggtcagatgatgagttgtacttgtcttggcaatggaaaaggagaatttaagtgtgaa
cctcatgaagccacgtgctatgatgaagggaagatgtacaatgttggagagcagtggcag
aaggaatatttaggggcaatctgttcatgcacatgctatggaggacagcaagggtggaga
tgtgacaattgccgcagaccaggtgctgttcttcccgatggcactgctgggcatacagtc
tctcagtttgcccagagataccaacagaactataatttgaactgccccattgagtgctac
cttcccctccaagcagatatacagcattcggaacagacccagaagtga
DBGET
integrated database retrieval system
