Xenopus tropicalis (tropical clawed frog): 733481
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Entry
733481 CDS
T01011
Symbol
fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
733481 (fip1l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
733481 (fip1l1)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
733481 (fip1l1)
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GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
733481
NCBI-ProteinID:
NP_001037890
Xenbase:
XB-GENE-985496
UniProt:
Q28IP4
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Position
1:39659099..39701504
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AA seq
577 aa
AA seq
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MVVSSGTGGSTAPTISSPVSSAVTAPVSASTGAAGGGGGGGGGDEEEEWLYGEENEAAAP
DDDEEDITSSHPVPGIEAEATENGVVKTVTETEDDSESDSDDDDDDVHVTIGDIKTGAPQ
PYGTTPVNLNIKTGGRIYGPTGGKGKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGAD
LSDYFNYGFNEDTWKAYCEKQKRLRMGLDALPVSSTTNKITVQQGRTGNAEKDTVLQSVK
PEFTSPTSLFKPGVPPPSRKTSSAIDVIGQTTTITRVEGRRRGANESNIQVVSEQSPSEV
DNNFIKPPPPFFPPGAPPTHLPPPPLFPPPPNVSTAPPLIPPPGSISFSMQKPSRYGIPI
TVPPPGFPPPPGGPPPSLIPTIESGHSSGYDGRSAPAFPYGSVSFPHMPGSAGPWSSLVD
TAKPWDYYPRREKDRDRERERDRDRDRDRDRDRERVRERERDRERERDHSPSAGAYNSEE
ERYRYKEYSERTERSYERHRERISREKEERHRERRHREKEESSRHKSSRSSRRRHDSEEG
DSHRRHKHKKSKRSKEGKDAGAEPVQESESVESTNAD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggtggtttcgtcggggacaggcggcagtaccgcccctactatctcctcacccgtctcc
tccgcagtcacagcccctgtcagcgcctcgaccggggcagcgggaggaggagggggagga
ggcggtggtgacgaggaagaggaatggctgtacggggaagaaaatgaagctgctgcacca
gatgatgatgaagaagacataacaagctctcaccctgtacctggaatcgaagcagaggct
actgagaatggtgttgtgaaaacggtgactgagacagaagatgacagtgaaagtgacagt
gatgatgacgacgatgatgtccatgttaccattggagatattaaaactggagcgcctcag
ccatatggaacaacccctgttaatctaaatattaaaactgggggaagaatatatggacca
acaggaggaaaaggtaaaggggtagatttggatgccccaggaagtattaatggcgtgcct
ctgctggaagtagacttggactcttttgaggacaaaccttggagaaaaccaggtgctgat
ctgtcagactattttaattatggttttaatgaagatacatggaaagcttactgtgaaaaa
caaaagaggctaaggatgggcttggatgcccttccagtttcttctacaacaaataaaatt
acggtacagcagggaagaacgggcaatgcagaaaaagatacagtcttgcagagtgtgaaa
ccagagtttacttctcccacttcattattcaaacctggtgttcctcctccaagtcgaaaa
acctcaagcgcaattgatgtgattggtcagacaaccactatcactcgtgtagagggacgg
cggcgaggtgcaaatgaaagcaatatccaggtagtttcagaacagtctccttctgaagtg
gataataattttatcaagccacccccaccatttttccctcctggagcaccccccacacac
ctaccaccacctccactttttcctccaccaccaaatgtcagtactgctccacctctcatc
ccacctcctggatcaatatcgttctcgatgcaaaaaccatctcgatacggaattcctatc
actgtgccacctccaggtttccctcctcctcctggaggcccgccaccatctcttatccca
acaatagaaagtggtcactcctctggctacgatgggcggtcagctcctgcatttccttat
ggcagtgtgtcttttcctcacatgcctggttctgctggtccgtggtccagtctggtagat
accgccaaaccatgggactactatccaagaagagagaaggatagagaccgcgaaagggag
cgagaccgtgacagagaccgagacagagaccgagaccgtgagcgagtccgtgagagggaa
cgggacagagaacgagagcgagatcacagtccaagcgcaggcgcatataatagtgaggaa
gaacgatacagatacaaggagtatagtgagcgtacggagaggagctatgagcgtcacaga
gagagaatcagcagggaaaaggaggaaaggcacagggaaaggaggcatcgagaaaaagag
gagtcgtctcgtcacaaatcttcccgaagcagcaggcgccgccatgatagcgaagagggc
gatagtcacagaaggcacaaacacaaaaagtccaaaagaagcaaagaagggaaggatgct
ggggccgaacctgtccaagaatcagaaagtgttgaatccaccaatgccgattag
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