Xenopus tropicalis (tropical clawed frog): 733861
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Entry
733861 CDS
T01011
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
733861 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
733861 (parn)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
733861 (parn)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
733861 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
DUF5329
NCBP3
RRM_1
PTHB1_pf
Motif
Other DBs
NCBI-GeneID:
733861
NCBI-ProteinID:
NP_001184102
Xenbase:
XB-GENE-1003103
UniProt:
A0A8J0QG33
B5DFR2
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All DBs
Position
9:complement(36029944..36113342)
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AA seq
632 aa
AA seq
DB search
MEMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKH
SMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPKPFNRNSPDKKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQKGF
IDKVVERVEDFLKNEQKSMDLEPCTGYQRKLIYQTLNWKYPRGIHVETLESEKKERYIVI
SKVDEEERKRMEQQKQAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFF
CQLPDELNEFKEVTNCVFPRVLDTKLMASTNPFKEIIYNTSLAELEKRLKEAPFKPPKVD
SAEGFPSYNTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKGYVSSRSKIIRPFFNK
LFLMRIMDIPYLNLEGPDLQPKRDNVLHVAFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSHPDQVQIAVNTSKYAESYRIQTYAEYVEKKNEENQTKRKWAEDGWKDLERKRLKT
QYNSYIPQTPVFYGNCFVAPSYAVKRSMSPIQEETASENTEEVRAQEDDPSNPGATEQGK
KPKNHKRQKTDSTPPETSDSGSSVLFEVPDTW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaccaggagcaattttaaggataatctgccaaaagtttataaagcaattgaa
gaggcagacttcttggctattgatggtgaattttcagggataagtgatggtccatctgtt
agcactttaacaaatggctttgatacaccagaagaaagatatacgaaactgaaaaagcat
tctatggagtttttactttttcagtttggtctttgcacttttaactatgataacacagaa
gcaaagtacttcatgaaatcatttaacttttatatctttccaaagccattcaacagaaat
tctccagacaagaagtttgtttgtcagagctcaagtatagactttctggctaaccagggt
tttgattttaataaagtttttcgcaatggcattccatatctgaaccaggaggaggaaaaa
cagctgcgagatcagtatgaagagaggcgttctcagtcaaatggagccagcgcaatgtca
tatgtgtctccaaatgcctcaaagactcctgtgagcatcccagatgagcagaagggtttt
attgacaaagtggtggagcgggttgaggattttttaaaaaatgaacagaaaagcatggat
ttggagccttgcactgggtaccaaaggaagctaatttaccagacattgaactggaagtat
ccacgaggcattcatgtagagaccctagaatcagaaaagaaggagagatacattgtcatc
agtaaagttgatgaagaagaacgaaaaagaatggagcagcagaaacaagcaaaagaacgg
gaggaactagatgatgctgtggggttttcccgaatcatccaagcaatttcatcctcgggt
aaacttgtagttggacacaacatgctgttggatatcatgcacactatacatcagtttttc
tgccagctgcctgatgagctaaatgagtttaaggaggtgacaaactgtgtttttccaaga
gtcttggatacgaaacttatggccagcacaaatccatttaaggaaattatttataacaca
tcccttgctgaactggaaaagagattaaaagaggctcctttcaaacctcctaaagttgac
agtgctgagggttttccaagttataacactgcctctgagcaacttcacgaagcaggatat
gatgcctacattacaggactgtgctttatttccatggcaaactatctaggttcatttctt
agcccaccaaaaggttatgtatcctctcgatcgaaaattattcgaccattttttaacaag
ctgtttttgatgagaattatggatataccttatctcaatttagaaggaccagacttgcag
cctaaaagggacaatgtacttcatgttgcatttccaaaagaatggaagaccagtgacctc
taccaactgttcagtgccttcggtaatattcaggtgtcctggatagatgatacctctgca
tttgtgtcactaagccatcctgatcaggtccaaatagctgttaacaccagcaagtatgca
gaaagctatcgtatccagacttatgcagaatatgttgagaagaagaacgaagaaaatcaa
acaaaaagaaaatgggcagaagatggatggaaagatttggagaggaagagactgaaaaca
caatacaattcctacattccacagactccagttttttacggtaactgttttgttgctcca
agttatgcagttaaaagaagcatgagccccatccaggaggaaactgcctctgaaaatact
gaagaagttcgtgctcaagaagatgatccttccaaccctggtgctacagagcaggggaag
aaacccaagaaccacaaaagacagaaaaccgactctactcccccagaaaccagtgacagt
ggctcttctgtcctttttgaagttccagatacttggtaa
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