Xenopus tropicalis (tropical clawed frog): 733994
Help
Entry
733994 CDS
T01011
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54 isoform X1
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
733994 (ddx54)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
733994 (ddx54)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
733994 (ddx54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
ZapG-like
Motif
Other DBs
NCBI-GeneID:
733994
NCBI-ProteinID:
XP_002934380
Xenbase:
XB-GENE-1011576
UniProt:
A0A6I8RLJ3
LinkDB
All DBs
Position
1:complement(145135537..145156978)
Genome browser
AA seq
847 aa
AA seq
DB search
MAQKKRKGQRSRKCCQNQESDESDTVGFRVKAAPQKEDGVKLPAFPTADATSDTELDTRE
MVRAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTG
SGKTACFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGG
DKMEDQFAALHENPDIIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQE
IISRLPETRQTLLFSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDK
PAVLLHLLRCVVKPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGL
FLHGKVRALLVTDVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIA
PDEIPYVYDLHLFLGRPLKLATAQMMETGADTDGVLGRVPQSLIDDEDALLITDRERSLE
LQNLHNVAENAYKQYIKSRPTPSPESIKRVKDANYNLLGVHPLFWSQLGEEEMQRLKFVD
GIKSYKSKATIFEINATNKTNASEVMRAKRSHDGKVIAKFQRLQEEKSATVQTLTSGISS
LSCKQESDEENMEGVFSQVLGKRKITDKDEAEGNKKRKAGTSHDTDYYIPYRPKDFESER
GLSIGASSFEQAAAGAVLDLLGDQTEDLRKNKQVMKWDRKKKKFVGTGGPEDKKKIKTES
GRLISSSYKKNLYEGWKKKYKIDDQDSEEEDEERDQRAAAGRRKGRGGRGPQRSSHSSLG
PQGKAKSELRSKQQILKTRKAQAKQNFLQKGGLKKMKNKTRHLANHMKKSAFGRGKSQGF
KKGKSRK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaaaaaacgtaagggacagcgatctcggaaatgctgtcaaaaccaagagagc
gacgaaagcgacacagtgggatttcgtgtcaaagctgcaccccaaaaggaggatggagta
aaacttccagcatttcccactgcagatgcaacttcagatacagaactggacaccagagaa
atggtgcgagcacagaataagaagaaaaagaaatctggcgggtttcagtccatgggtctt
agttacccagtctttaaaggagtgatgaagaaaggttacaaggttcctactcccattcag
agaaaggtgattccagtcattcttgatggcaaggatgtggtagcaatggctagaacgggc
agtggaaagactgcctgtttccttatccctatgtttgagaagttaaaggctcacagtgcc
caaacaggagttcgtgggcttatcctttcaccaactagagagctggccttgcagactctg
aaattcacaaaggagcttggtaaattcactggtctgaagactgctctgattttaggtggt
gacaaaatggaagatcagtttgctgctctgcatgaaaatccagatataattattgccact
cctggtcgactgatgcatgtggcaattgagatgaacctgaaacttcgcactgtggaatat
gtggtgtttgacgaagctgacagactctttgagatgggatttgcagagcagctgcaagag
ataatctctcgactaccagagacacgccagacactccttttttccgccactctgcccaag
atgcttctagagtttgcccgagctggccttactgagcctgtcttaatacgtttggatgtt
gatacaaagctgagtgaccagctgaagttgtccttcttcaatgtgcgagtagaggacaaa
cctgctgtgcttctgcatctcctgcgctgtgttgtaaagcctcaagaacaaacagtcatt
tttgttgccactaagcaccatgcagaatacctgagagagttgctggacatgcagggaatt
ccatgctctcacatatacagtgctctggatcagacagccaggaagataaacctgggcctt
tttttgcatgggaaggtgcgtgcactgcttgtcacagatgtggctgctcgaggtattgac
ataccaatgttagacaacgtcataaactacaacttccctccgaaagccaagcttttcctg
catcgtgttgggcgtgtggcaagagcagggcgaagtgggactgcttactctcttattgct
cctgatgaaattccctatgtgtatgatctccatctctttcttgggcggccgcttaaactg
gcaacagcacaaatgatggagacaggagcagacacagatggggtactggggcgagtacca
cagagtctgattgatgatgaagatgccttgcttattacggatcgtgagcgatcgctggag
ctgcagaacttgcacaacgtggcagagaatgcctacaaacagtacattaaatccaggcca
actccctctcccgagtccatcaaacgagtcaaggatgctaactataacctgttgggggtt
cacccactcttttggtctcagcttggtgaagaagagatgcagaggctgaagtttgtggat
ggcatcaaatcttacaaatctaaagcaaccatatttgaaattaacgctactaataaaacc
aatgcaagtgaagttatgcgagccaagagaagtcatgatgggaaggtcatcgctaagttc
cagcgcctgcaggaggagaaaagtgcaacagtgcagactttgaccagtggcatctccagc
cttagctgcaaacaagagagtgatgaggagaacatggagggagtattttcgcaagtgctt
ggaaaaaggaaaattactgacaaagatgaagctgaaggcaacaagaaaaggaaagcagga
acttctcatgacactgactattacatcccatacagaccaaaggattttgagagtgagagg
gggctcagcattggggccagcagctttgagcaggcagctgcaggggctgtgttggaccta
ttgggagaccagacggaagatctcaggaagaacaaacaagtcatgaagtgggatagaaag
aaaaaaaagtttgtgggaacaggtggaccagaagataaaaagaaaattaagactgagagt
ggacgactcattagtagctcctataaaaaaaacctatatgaaggctggaagaagaaatac
aagattgatgaccaagattctgaggaagaggacgaggaaagagatcagagggcagctgcg
gggcgcaggaaagggcgaggtgggcgtggcccccaaagaagctctcattcaagtttaggg
ccacaggggaaagccaaatcagagctgcgtagcaaacagcaaatcctcaagacgagaaag
gcacaagctaaacagaacttcttgcaaaaaggcggtttgaagaagatgaaaaacaagaca
agacacctagccaatcatatgaagaaatctgcttttggaagagggaaaagccaaggtttc
aagaaaggaaaatcaagaaaataa
DBGET
integrated database retrieval system
