Xenopus tropicalis (tropical clawed frog): 734085
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Entry
734085 CDS
T01011
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
734085 (ddx21)
03036 Chromosome and associated proteins [BR:
xtr03036
]
734085 (ddx21)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
734085 (ddx21)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
734085 (ddx21)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
734085 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
DciA
AAA_19
Motif
Other DBs
NCBI-GeneID:
734085
NCBI-ProteinID:
NP_001039224
Xenbase:
XB-GENE-1012547
UniProt:
Q28BT0
LinkDB
All DBs
Position
7:39036264..39047573
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AA seq
755 aa
AA seq
DB search
MPVKVYVDEMEVESVKKKKQSETPLPKIKKRKMQNGATEDLDLEQVAESVNGEINNNNPT
PKLKKKKKPVPQSDLSETAEQYEGEQPDPSTPIPKKVKKKKLKEGKEDSDTQEGTDKSEP
QMNGVKSVKKSKKNTTGDDNEPTPKKRKKDTMEITASEECEEKQLTKEEEEINQEKIDGD
FSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVER
LNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKLKVCCFYGGTPYQQQVFSIKE
GFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPEE
NPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVL
GDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQG
SFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPRER
HYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKSLDSVPADVIEHFKEYAQELIEKKG
ALTALAAALAHISGATSIKQRSLLNMEAGYVTITLKSSVQIHNLSYAWRSIKEQLGEDID
SKIHRMCLLKDSMGVCFDVRSENLQSMQEGWKDTRRWQFTVATELPAIQESERNFDGPRN
GGFGGRGRRPFDRRNNSRGGGGRGRNRSGGFRRGR
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgaaggtttatgtcgatgaaatggaggttgaaagtgtcaagaagaagaaacag
tctgaaactcctctacccaagataaaaaagagaaaaatgcagaatggggcaacagaagat
cttgatttggaacaggtggcagaatctgtaaatggagagatcaacaacaataatccgact
cccaagctgaagaaaaagaagaagcctgtgccacaatcagatctctctgaaaccgcagaa
cagtatgaaggagagcagccagatccaagcactcccataccaaagaaagtcaagaagaaa
aaactaaaagagggcaaggaagattcagacacacaggaagggacagacaaatccgaacca
caaatgaacggcgtaaagagtgttaaaaaatctaaaaagaacacaacaggtgatgataat
gaaccaactcctaagaaaagaaaaaaggatacaatggagatcacagcatccgaggagtgt
gaagaaaagcagttaaccaaagaggaagaggaaataaatcaagaaaaaatagatggcgac
ttctctaaatttccaatttccaaggacaccattaagaatttgcaagctaaaggtgtgtcc
tacctgttcccaattcaatccaaaacattccacactgcttacagtggcaaagatgtagtg
gtccaggcccgtacaggcacagggaaaacattttcctttgctattcctttagtggagcgg
cttaatgaggaccaacagccgttggctagaggacgtgcgcctagggtgataattcttact
cccaccagagagttagctattcagatcacaaatgaaatccgcagcatcactaaaaagctg
aaggtctgttgtttctacggaggaactccatatcaacagcaagttttctccattaaggag
ggatttgactttttagttggcacacctggccgtgtgagagatcttgtccaaaactaccgt
ttggacctcactgttttaaagcatgtggtactagacgaagttgacatgatgtttgatatg
ggcttctcggaacaagtcgaggaaatattatctgttcgctacaaacctgatcctgaagaa
aatccccagactcttcttttctctgcaacatgtccagactggatgtacaatgtggctaaa
aaatatatgaaaaaacagtttgaaaaaattgacttggttggacatagaagtcagaaggct
gccatcactgttgagcatttggccattgagtgcaccaggtcccagaaggcagcggtcctt
ggagatatagttcaggtctacagtggtagtcacggaaaatccatcatcttttgtgattca
aaattagaagctcacgaattagccacaaactgtggctcattaaaacagtctgccaaacca
ttacatggggacctccagcaaaaggaaagggaagtcatcttgaagggtttcaggcaggga
tcatttgaagttcttgttgcgaccaatgtagctgctcgtggattggatatcccagaagtt
gaccttgtagtattgtactctgcaccaaaggaagcagatgcttatgttcatcggtcaggg
cgcacaggaagagccggacgcacaggaatctgcatatccctttatgaaccaagagaaagg
cattatcttcggaatgtggagaggagcacgggaatcacattcaaacgtgttggaatacct
tccttattgaatgttgccaaatcatccagtgctgatgcaataaagtccttggattcagtt
ccagctgatgtgattgagcattttaaagaatacgcccaggagctgattgagaagaagggt
gcattaactgccctagctgcagctttagctcatatttctggggcgacgtccattaaacaa
cgctctttgctcaacatggaagcgggttatgtgacaataacgttgaagagctcagtgcaa
attcacaacttaagctatgcatggcgatcaattaaagaacaactgggtgaagatattgat
tctaaaattcatagaatgtgtctcctgaaggattccatgggtgtgtgttttgatgtccgt
tctgaaaacctgcagtcaatgcaggagggctggaaagatacaaggcggtggcagtttaca
gttgcaactgaattacccgcgattcaagaatctgagagaaactttgatggtccaaggaat
ggaggttttggaggaagagggaggagaccttttgatagaagaaataattccagaggagga
ggaggaagaggcagaaatagaagtggagggtttagaaggggccgttag
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