KEGG   Xenopus tropicalis (tropical clawed frog): 734106
Entry
734106            CDS       T01011                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    734106 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xtr03400]
    734106 (tdp1)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     734106 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho CodY
Other DBs
NCBI-GeneID: 734106
NCBI-ProteinID: NP_001039242
Xenbase: XB-GENE-950568
UniProt: Q28BM1
LinkDB
Position
8:86509887..86574862
AA seq 597 aa
MDRTSASQQSNYGKWTLSSSEDETEDSGIPSPPSSSRESRDSVPHYPCSDARKASHKRKA
NPVKFKEMSKKELIPAKKIKTETEVSGWCLSSSDEESKPTQVEQKGNIKADKIEVLVQSK
KIQENIEVKQKKCKTPSDSQDTWDLLQAGEPFRFYLTKVMGIKPKYNSGALHIKDILSPL
FGTLVSSAQFNYCFDIKWLVKQYPEEFRDKPLLIVHGEKRESKAKLHEDAHPYEHIRLCQ
AKLDIAFGTHHTKMMLLLYTEGLRVVIHTSNLIHEDWYQKTQGIWLSPLYPRLPEGASVS
AGESSTNFRSDLVAYLASYNSPSLREWMDIIKQHDLSETRVYLIGSTPGRFQGNDKDKWG
HFRLRKLLRENTSAAPGQETWPVIGQFSSIGSMGVDKTKWLCSEFTESLTTLGKSIKSLQ
KTEIPLHLIYPSVDNVRTSLEGYPAGGSLPYSIQTAQKQPWLHSYFHKWKAETSRRSQAM
PHIKTYMRLSPDSQHLAWFLVTSANLSKAAWGSLEKNGAQLFIRSYELGVLFLPSAFETN
TFNVKLNIYASNEPSSNAFPVPYDLPPEHYGAKDRPWVWNIPYVNAPDTHGNIWCPP
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggacaggacctcagcttcccaacagagtaattatggtaaatggaccttatctagcagt
gaggatgaaacagaggacagtggaataccatctcctccatcaagtagtagagagagtcgg
gattctgttcctcattacccctgctccgatgccagaaaagcatctcacaaaagaaaggcg
aatccagttaaatttaaagagatgtctaaaaaggaattgattcctgccaagaaaataaaa
actgagactgaagtttcaggatggtgcttatcgagtagtgatgaagaatcgaaacctacc
caagttgaacaaaaagggaacattaaagcagacaaaatagaggtgctagtgcaaagcaaa
aaaatacaagaaaacatagaggtgaagcaaaaaaaatgcaagacaccaagtgattctcaa
gacacatgggacctgctccaggctggtgagcctttccgcttctaccttactaaagttatg
gggatcaaacctaaatacaactcaggtgcacttcacataaaagatattttatctcctctt
tttgggacacttgtatcttcagcacagttcaactattgctttgatattaagtggctagtg
aaacaatatcctgaagaatttagagacaagccactgcttattgttcatggtgagaagaga
gaatcaaaagctaaactacatgaggatgctcacccttacgaacacatccgtctgtgtcag
gccaagttggatatcgcctttgggacccaccacacgaaaatgatgttgctgttgtacaca
gagggtcttagagttgtaatccataccagtaaccttatccatgaagattggtaccagaaa
acacaaggtatttggttaagcccattgtatcctcggcttcctgaaggagcttcggtttct
gcaggtgaatcttctacaaattttcgatctgaccttgtagcatatttagcctcttacaat
tctccgagcctaagagagtggatggatatcattaagcagcatgatctctcagaaacaagg
gtatacctaattggatcaacaccaggaagatttcaaggaaatgacaaagataaatgggga
catttccgtttgagaaagctattaagagaaaacacatctgcagcaccagggcaggaaaca
tggccagtgattggacagttttcaagcataggatccatgggtgtggacaaaaccaagtgg
ctatgctcagaattcactgaaagtctgacaaccctgggaaaaagcatcaaaagtctacag
aaaactgagattcctctgcatctgatatatccctctgttgataatgtaagaactagctta
gaaggataccctgctggtggctcattgccttatagcattcagactgctcaaaaacagccg
tggctgcattcctatttccataagtggaaagcagaaacctcgagacgtagccaagcaatg
ccccacatcaaaacatacatgaggttatctccagattcccagcacctggcatggttttta
gttactagtgctaatctatcaaaagctgcctggggttcactggagaaaaatggtgcccag
ctgtttatccgctcttatgaactgggggttctgttcttgccttctgcattcgaaacaaat
acattcaatgtgaaactgaatatttacgccagcaatgaaccttctagtaatgcctttccg
gtgccctatgacttacccccagaacattatggtgccaaagacaggccctgggtttggaat
atcccttatgtgaatgctcctgacacacatgggaatatttggtgtcctccttaa

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