Xenopus tropicalis (tropical clawed frog): 779469
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Entry
779469 CDS
T01011
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xtr03041
]
779469 (ythdc2)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
779469 (ythdc2)
Spliceosome [BR:
xtr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
779469 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
R3H
HA2_C
OB_NTP_bind
Helicase_C
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
ATPase
AAA_22
AAA_7
PhoH
NPHP3_N
SRP54
Ank_3
ResIII
AAA_29
AAA_23
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
779469
NCBI-ProteinID:
XP_002936459
Xenbase:
XB-GENE-5881731
UniProt:
F6TPR8
LinkDB
All DBs
Position
1:complement(172639632..172719065)
Genome browser
AA seq
1419 aa
AA seq
DB search
MSRPNSTSPRPNVVKKPSPANPGRSKGLKDIRIDEEVKIAVNIALEKFRYSDQKEMEFPS
SLTSTERAFIHRLAQSLGLVSKSKGKGPNRCLTLKKKNGSEASSSLMSCTLTQNTKKAVC
NLIQRFPLTNKERTELLPKTERGNVYAIEAENREIGKTSGCLNGGIPQVPDKRGESKYDF
FRQSLPVFEKQEDIIRIIKNNKVVLIVGETGSGKTTQIPQFILDNCQKNGLPCRIFCTQP
RRLAAISVAERVAAERGEIIGQCVGYQIRLESRVSPKTLLTFCTNGVLLRTLMGGDSTLS
AITHIIVDEVHERDRFSDFLLTKLRDAIQEHPTLKLILSSAALDVNLFIRYFGGCPVIYI
QGRPFEVKEMFLEDILRSTGYRNKGMLKYNKEKQCEEKQKTTLTEWYSAKQKNMKPETQR
QRSVPAIKEEYDILDDGGDTAFGQMTEKDANCLEPWLIKEIDACLSDIWLYRDKDAFAQL
FHLISTENVSVDYRHSETSATPLMVAAGQGFLSHVEQLISMGANIQSKASNGWMALDWAK
HFGQTEVVDLLESYSASLETEDLDENTLVQSDGNDLSIEDRELLKAYHHSFDDEKVDLDL
IMHVLFNICQITDTGAILIFLPGYDEIVGLRDRILLDDKRFADNAQRYHVFMLHSNMQTS
DQKKVLKLPPAGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNNVTMLKMVWI
SKASAIQRKGRAGRCRPGICFRLFSKLRFQNMLEFQTPELLRIPLHELCLHTKLLVPINC
PVADFLMKAPEPPPALIVRNAVQMLKTIDAMDNWEDLTEIGHHLADLPVEPHLGKMVLCA
VILKCLDPILTIACTLAYRDPFVLPSQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQ
KAKSDGWERAFCEKNFLSQATMEIIIGLRTQLLGQLRASGFVRARGGGDIRDVNINSENW
AVVKAALLSGMYPNLIHVDRENMVLSGVKEKRVRFHPSSALSEPQYKKIPSANCQAEAVQ
ALPTDWLVYDEMTRSHRIANIKCCSVVTPVTAVLFAGPARLPSSALKEPSSFQVGDGIPN
DSSDSEMEDRNTFTLATLKLDEWLHFRLDPEAAGLLFQLRQKWQSLFLRRIQAPSKPWSQ
VDEATIRVIIAVLNTEEQSAGLQQPSGIGQRPRTLNCEDHLLTSGRINNSQKNFTEAESL
DDPSSLDRIAPPSAFSPQAKYKEKGNSLHKWPEDKSDLSSVKYKLSDNSSHPSPCESPSP
SSSAKGSNSPSPRQTIFVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNQAFWESSTV
YLVFSVQGSGHFQGFARMTSEIGREKSQDWGSTSLGGVFKVEWIRKESLPFQQAHHLLNP
WNDNKKVQISRDGQELETLVGEQLLLLWDRVPLTSKSIP
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcccaaatagcacttcaccaaggcccaatgttgttaaaaagccaagtcctgct
aacccaggtcgctctaagggtcttaaagatatccgtatagatgaagaagtaaaaatagct
gtcaacattgcactggagaagtttcgttatagtgatcaaaaagaaatggaatttccttca
tcgttgacaagtactgagagagcatttattcatcgactggcacagtcactgggacttgtg
tctaaaagcaaagggaaaggtccaaatcggtgcctgacattgaaaaaaaagaatggatca
gaagcttcaagctcgctgatgtcctgcactctgacccaaaatacaaagaaagcagtatgt
aacctcatccagagatttcctctcacaaataaggaaaggacagagttgcttcccaaaaca
gagaggggaaatgtgtatgctattgaggctgagaatcgtgaaataggcaagaccagtgga
tgtttaaatggtggcattcctcaggtaccagataagagaggagaatcaaaatatgatttc
ttcaggcaatctttaccagtctttgaaaaacaagaggacatcattagaattattaagaac
aacaaagttgttttgattgtgggagaaaccggatcagggaagacaactcagatacctcag
tttattcttgataattgccaaaaaaatggattaccgtgtcgcatattttgcacccagcca
aggcgactggcagcaatatctgttgctgaaagagtcgcagcagagagaggggagataatt
ggccagtgtgttggttaccagatccgacttgaaagccgagtttcacccaagactctactt
accttttgtactaatggagttctacttcgcaccctgatgggaggagacagcactctatct
gctataactcacattatcgtggatgaagttcatgaacgtgatcgatttagtgacttcctg
ctgaccaaacttagagacgcaatacaggagcaccctactttgaagctgatcctttcaagt
gcagccttggatgttaacttgttcataagatattttggaggttgccctgttatatatata
caaggaagaccttttgaagtaaaagagatgtttttagaagatatactgaggagtactggg
tacagaaataagggaatgcttaaatataacaaagaaaaacagtgcgaggagaagcaaaag
acaacattaactgaatggtattctgcaaaacaaaagaacatgaagccagaaactcaacgg
cagaggagtgtcccagcaattaaagaagaatatgacatattagatgatgggggtgacact
gcctttggtcagatgactgaaaaagatgccaactgtcttgagccgtggttgataaaggaa
attgatgcttgtctctctgatatttggctctatcgagataaggacgcttttgctcagctc
ttccatttgatatcaacagaaaatgtcagtgttgactacagacacagtgaaactagtgct
accccattaatggtagcagccggacaagggtttttaagtcatgtagagcagctaattagc
atgggggccaatatccagagcaaagcatcaaatggatggatggctttggattgggctaaa
cactttggccagactgaggttgtggacctgttggagtcgtacagtgcttctttggagact
gaggatctggatgagaataccctggttcaatctgatggcaatgatttgagcattgaggac
agagaactcttaaaagcttaccatcacagttttgatgatgaaaaagtagatcttgatctt
attatgcacgttctttttaacatctgtcaaataaccgatacaggggctatactaatcttt
cttcctggctatgatgaaatagtagggctgagagatcgaatcttgctcgatgacaaaaga
tttgctgataatgctcaaaggtaccacgtatttatgttgcattcaaacatgcagacatca
gaccagaagaaagtgctaaagcttccaccagctggcatcagaaaaattatactttctact
aatattgccgaaaccagcatcacagttaatgatgttgtttttgtgattgactctggtaaa
gttaaagagaaatcctttgatgctctgaacaacgtaaccatgcttaaaatggtgtggatt
tccaaagccagtgcaattcaaaggaaaggaagggctggtcgctgtaggcctggaatctgt
ttccgtttatttagcaagcttcgttttcaaaatatgttggaatttcagactcctgaacta
ctgaggatacctctgcatgagctctgcctacacaccaaattgctagtgccaattaactgt
cctgttgcagattttctaatgaaagctccagagccgccaccagctctaatagtccgtaat
gctgtacagatgctgaagactatagatgccatggataattgggaagatctgacagaaatt
ggtcatcatttggcagacctgccagtagagccccaccttgggaaaatggtgctttgtgca
gtaattttaaagtgcctagatccaattttgaccatagcctgtactttggcctaccgggat
ccttttgtcttacctagccaagcctctcagaaacgtgctgccatgctgtgcagaaagaga
tttacagcaggaacatttagtgatcatatggctctacttagagctttccaggcatggcag
aaagcaaaaagtgatggatgggaaagggcattttgtgagaagaattttctttctcaggcc
acaatggaaattatcatcggactgaggacacagctcctgggtcagcttagagcttcaggt
tttgtaagggctcgtggaggaggagatatacgggacgttaatataaactctgaaaattgg
gctgtggtgaaggctgccctgttgtctggcatgtatccaaacttaatacatgtggacaga
gaaaatatggtactaagtggtgtaaaggaaaagcgtgtgaggttccaccctagctctgca
ttaagtgagccacagtacaaaaagatcccttctgcaaattgtcaggcggaagctgttcaa
gcattgcctacagactggcttgtgtatgatgagatgacccgttcccatagaattgcaaat
attaagtgctgttcagtggttactccagtgactgcagtgttatttgcaggacctgcaaga
cttcccagcagtgctttgaaggagccgtcttctttccaagttggcgatggtataccaaat
gacagtagtgacagtgaaatggaggacaggaacacgttcactctagcaacacttaaactg
gatgaatggctgcatttcagattggaccctgaggctgctggacttttatttcaacttcgg
cagaaatggcagagcttatttcttaggcgaattcaagcaccgtcaaaaccttggtctcaa
gttgatgaagccaccattagagtaattatagctgttctaaacacagaagagcaatcagct
ggtttgcagcaaccttccgggattggacaaagaccaaggacattgaattgtgaagaccat
ctgttaacttctgggaggattaataatagtcagaagaatttcacagaggcagagtcacta
gatgatccatccagtttagacagaattgctccaccgtcagccttcagtccacaggcaaaa
tataaagagaaggggaattcgctgcataaatggcctgaagacaaatctgatctgtcatca
gtgaaatacaaattatcggataacagtagccatcccagtccctgtgaaagtccttcccct
tcatcctctgcaaagggctcaaactcaccatcccccagacaaacaatatttgtgcgatac
ttcatcatgaagagcagcaaccttagaaatcttgaaatttcacagcagaagggaatatgg
tccacaacaccgagcaatgagcgcaaattaaaccaagccttttgggagagcagcacagtt
tacttggtgttctctgttcaaggttcgggccactttcagggctttgcaagaatgacttca
gagattgggcgagagaaaagtcaggactggggctccacaagccttgggggtgtgtttaaa
gtggaatggataagaaaagaaagcctaccttttcagcaggctcatcacttgcttaaccca
tggaatgataataaaaaagttcaaatcagccgtgacgggcaggaacttgagacacttgtt
ggagaacagttgcttctgttgtgggacagagttcctttgacaagcaaaagtattccttag
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integrated database retrieval system
