Xenopus tropicalis (tropical clawed frog): 779546
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Entry
779546 CDS
T01011
Symbol
cdh1
Name
(RefSeq) cadherin-1
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04371
Apelin signaling pathway
xtr04514
Cell adhesion molecules
xtr04520
Adherens junction
xtr05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
779546 (cdh1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
779546 (cdh1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
779546 (cdh1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
779546 (cdh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xtr03036
]
779546 (cdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xtr04515
]
779546 (cdh1)
04090 CD molecules [BR:
xtr04090
]
779546 (cdh1)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
779546 (cdh1)
Cell adhesion molecules [BR:
xtr04515
]
Cadherins
Major cadherins
779546 (cdh1)
CD molecules [BR:
xtr04090
]
Proteins
779546 (cdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
779546
NCBI-ProteinID:
XP_002936043
Xenbase:
XB-GENE-482277
UniProt:
A0A8J0QQW8
LinkDB
All DBs
Position
4:complement(61444319..61476950)
Genome browser
AA seq
872 aa
AA seq
DB search
MGSHRPWLLGAVVLLALLQVQGGLAEWTQCQMGFSKERYSFSVPKNLETDKALGRVIFNS
CEGPVRIQFASKDPNFEIHKDGTVYVKNPTKMKDNRKTFRVLAWENQGHVYSTSVTLKGE
GHHHKQDISSVKHSHHPKSETGLKRQKRDWVIPPIVTSENEKGPFPKRLVQIKSSNAKEI
KVFYSITGQGADTPPEGVFTIGREDGWLNVTRPLDREAIDSYTLFSHAVSVNGQNVEDPM
EIQIKVQDQNDNDPVFTQEVFEGYVPEGSKPGTPVMTVSATDADDAIDMYNGVITYSILN
QDPKEPNNQMFTIDSQSGLISVVTTGLDREKIPVYTLTIQAADGEFGKDRTTTAKAVIIV
TDTNDNPPVFNPTQYIAEVPENEVGYEVARLTVTDADIEGSDAWNAVYKIIKGNEAGFFS
IQTDIDNIGLLKTVKGLDYELKKQYILSVIVTNKANFSVPLQTSTATVTVTVTDVNEAPV
FVPVLKDVSVPEDLPSGQVVATYTAQDPDKEQNQKISYFIGNDPAGWVSVNRDNGIVTGN
GNLDRESKFVLNNTYKVIILAADSGTPSATGTGTLVLNLIDVNDNGPFLDPQQNSFCQKD
PGFRVFNIIDKDLYPNTYPYTVDLTGESNENWTATVTEQSLLELRPKKELDIGRYEVLIS
LRDNQGLTDVTKLQITICQCNGDQMQCEEKAAQAGGLGISAIVGILGGILALLLLLLLLL
LFVRRKKVVKEPLLPPEDETRDNVFFYDEEGGGEEDQDFDLSQLHRGLDARPDIIRNDVV
PVLAAPQYRPRPANPDEIGNFIDENLHAADNDPTAPPYDSLLVFDYEGSGSEAASLSSLN
SSNSDLDQDYSALNNWGPRFTKLAEMYGGDED
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggggtcacacaggccatggttacttggtgctgtggtgctgctggcactccttcaggta
cagggaggactggcagaatggacacagtgtcaaatgggattttccaaggaaaggtacagc
ttttcggtacctaagaacttggagacagacaaagcactgggtagagtgatctttaacagc
tgtgagggaccagtgagaattcagtttgcctctaaagatcctaattttgaaattcacaaa
gatggcacagtttatgttaagaatcctaccaagatgaaagacaacagaaaaacattccgt
gtcctggcttgggagaatcaaggtcatgtatactctaccagtgtaaccttgaaaggggaa
gggcatcaccataagcaggacatttcttctgtgaaacattcccaccacccaaaatctgag
actggtttaaaaagacaaaaaagagactgggtgattccaccaatcgtaacatctgagaat
gaaaagggcccatttcccaaacggcttgtgcagatcaagtccagtaatgcaaaggaaatc
aaggttttttacagtatcacaggccagggtgccgatacccctccagaaggagtgttcact
attggacgggaggatggatggctaaatgtgacacgacctttggacagagaagccattgat
agttacactcttttttctcatgctgtgtcagtaaatgggcaaaatgtggaagatcccatg
gaaatccaaattaaagtacaagatcagaatgataatgacccagttttcacacaggaggtc
tttgaaggctatgtgcctgaagggtctaagccaggtacgcccgtcatgactgtatctgca
acagatgccgatgatgctatagacatgtacaatggtgtgattacttactccattctcaac
caagaccctaaagagcccaacaatcaaatgttcactattgattcccagtctgggttgatc
agcgtagttacaactggattagacagagagaaaataccagtgtacacactgactattcaa
gctgcagatggagaatttgggaaagatcgcacaacaactgcaaaagctgtgatcattgtg
acagacaccaatgataaccctcctgtgtttaacccaacgcaatacattgcagaggttcct
gaaaatgaagttggatatgaggttgcacgtcttacggtaacagatgcagatattgaaggg
tcagatgcctggaatgctgtgtacaagatcattaaaggaaatgaggctggctttttcagc
atccaaacagatattgacaacattgggctactgaaaacagtgaagggtctggactatgag
ctgaagaagcagtatattctgtcagtcattgtgacaaacaaagctaacttttctgttcca
ctacaaacttcaactgcaacggtcactgtaactgtcacagatgtgaatgaggccccagta
tttgtaccagtgttgaaagacgtgtctgtgccagaggatctgcccagtggccaagttgtt
gctacctataccgcacaggatccagacaaggaacagaaccagaaaataagttacttcatt
ggaaatgacccagcagggtgggtgtctgtgaacagagataatgggattgtcactggaaat
ggaaacttggatcgggaatcaaagtttgtgctaaacaacacctacaaagtcataatcttg
gccgctgacagtggcactccttctgccactgggactggaacccttgtgcttaatctcatt
gatgttaatgataatggcccatttttggatccccaacaaaatagtttctgccagaaggat
ccaggctttcgtgtatttaatatcattgacaaagatctttaccctaacacatacccatat
acagtagacctgactggtgaatccaatgaaaactggactgctacagtgacagaacagagt
ttacttgagctgagacctaaaaaggaactggatattggacgatacgaagttttgatctca
ttgagagacaatcagggactgacagatgtgacaaagctacagattacaatctgtcaatgt
aatggtgaccaaatgcaatgtgaggaaaaggctgctcaagcaggaggtttggggatatca
gccatagttggaatccttggagggatcctagcgcttcttttattgttgttgctgctctta
ctgtttgtacgacgaaagaaagtggtaaaagaacctttattaccaccagaagatgagact
cgggacaatgtatttttctatgatgaagaaggcggtggtgaggaagaccaggattttgat
ctaagccagcttcaccgtggtctagatgctcgtccagatataatccgtaatgatgtcgtt
ccagttttagctgctccccagtatcgaccccgtcctgccaatccagatgaaattggaaat
ttcattgatgagaacttgcatgcagctgacaatgaccccactgctcctccatacgactcg
ctccttgtgttcgattacgaaggcagtggctctgaggccgcatcactcagctctcttaac
tcttccaactctgatttagatcaggattacagtgctttgaataactggggacctcgtttc
accaaactggcagaaatgtatggaggagatgaggattag
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