Xenopus tropicalis (tropical clawed frog): 779569
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Entry
779569 CDS
T01011
Symbol
sox1
Name
(RefSeq) transcription factor Sox-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
779569 (sox1)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
779569 (sox1)
SSDB
Ortholog
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Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
779569
NCBI-ProteinID:
NP_001074465
Xenbase:
XB-GENE-1018269
UniProt:
A2TED3
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All DBs
Position
2:complement(116549825..116552954)
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AA seq
401 aa
AA seq
DB search
MYSMMMETDLHSPGVQPPSNTGQTGGGGGNKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLHAAGGGHMGVGLSPGGGGGGTGGVVVQRLESPGSGASAGGYAHMNGWANGAY
PGSVAAAAAAAMMQEAQLAYSQQQQQHPGSGGHHPHHHPHHPHHHPHHHPHHNPTPHPPP
PPPQPMHRYDMSALQYSPLPGAQTYMTASPSGYGALGYSSSQQQHQGSPSSAAVAAAAAA
AAAAAASSGALGALGSLVKSEPSVSPPVSGGGPHNRPPCPGDLREMISMYLPSGGEAGDP
AAAAAAAAAAAAAATSRLHSLPQHYQGAGTGVTGTVPLTHI
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagacggacttacactcccccggggtgcagccccctagcaac
acggggcaaactgggggaggagggggcaataaagccaaccaggaccgggtcaagcgaccc
atgaacgcctttatggtatggtccagagggcagaggagaaagatggcccaggagaacccc
aagatgcacaactcggagatcagcaagaggctgggggctgagtggaaagttatgtcggag
gctgagaagagacccttcattgacgaggccaagaggctgcgcgccctgcacatgaaggag
cacccggattataagtaccggccgcggcgcaaaaccaagaccctgctcaagaaggacaag
tactctctagccggggggcttctgcacgctgctggaggaggccacatgggggtcggcctg
agtccgggtggaggaggagggggaacgggaggagtggtggtacaacgcctggagagtccc
gggtcaggcgcttctgccggtggctacgcacatatgaacggctgggccaatggcgcttac
ccgggctctgtagctgctgctgccgctgcagcgatgatgcaagaagctcagcttgcctac
agtcaacagcagcaacagcaccctggcagcgggggccaccacccgcatcatcacccccac
cacccacaccatcacccgcatcaccatccgcaccacaaccctacgccacacccgccaccc
cctccgccccaacccatgcaccgttatgacatgagcgccctgcagtacagcccgctgccc
ggtgcccagacctacatgaccgcttctccctctggctatggggcgctgggctacagctcc
agccaacagcagcaccagggttctccgtcctcggccgcggtggcggcggctgcagctgct
gcagccgccgctgcagcttcatctggtgccctaggggcactgggatccctggtgaaatcc
gaacccagtgtcagtcccccagtgagcggaggtgggccccataaccggccgccctgtccc
ggagatctacgggagatgatcagcatgtacttgcctagtgggggggaagccggggacccg
gccgctgctgcggcagcggcagcagcggcggctgcagcagcaactagtagacttcacagc
ttgccccagcactaccagggggcagggacgggggtaaccggcaccgtgcccctcacacac
atctga
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