Xenopus tropicalis (tropical clawed frog): 779951
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Entry
779951 CDS
T01011
Symbol
arhgef12
Name
(RefSeq) rho guanine nucleotide exchange factor 12
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04270
Vascular smooth muscle contraction
xtr04625
C-type lectin receptor signaling pathway
xtr04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
779951 (arhgef12)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
779951 (arhgef12)
09153 Circulatory system
04270 Vascular smooth muscle contraction
779951 (arhgef12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xtr04131
]
779951 (arhgef12)
Membrane trafficking [BR:
xtr04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
779951 (arhgef12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
779951
NCBI-ProteinID:
NP_001072496
Xenbase:
XB-GENE-485387
UniProt:
Q0P4S2
LinkDB
All DBs
Position
7:complement(78816100..78921953)
Genome browser
AA seq
1417 aa
AA seq
DB search
MSGTQSAASDRFHSRKPTRHGSILYRESSTDKKQKVERSVSSSHDFDATGLVQRCVVIQR
DENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHIEVVKLIKSG
SYVALTVQGRPPGSPTIPLTDSEADVHNLGPIMPPHSPVTQGHGKGITSPILMEEENNIV
HTQKLDILKKMLQKEQDQLQQFQEEYNSTPSPRLSKEIQDSKKHIAQLQERLLKARGLSQ
GSESLQISELDADSSDILGRTDYSSGDGSRPNSDIADSPRSGQREKSFLEESPEKSEIQD
TDSQSSMGSPSIRFTHNIIGAEDDDFDAEPEQQMNGQCSCFQSMDLLKSHPAHLAVFIHH
VVSQFDPAAMLCYLYTDLYQQTNSKETRRVFLEFNQFFLEKAGNLRVSVPDDVALELEKR
RPELIPEELHRQYIQTMQERLSEDVKKNLEDFKQKRSMGLTLAEGELSKLDADRLRDRNT
MEKERVCAEQILQKIDEILFSSQTPEDEKSNTIQYVILTYMKHLGVKVKEPRSLEQKRGR
IGFLPKIKQSMKKDREGEEKVKRRGFPSILAPQRKPSRQDSNAIGRAMELQRPRHPKHLS
TSSSSSPEPADGSRLRTSGGSIEGSDTPFSPSSNLGAAYTFQEVGREVEGNFRCGENMSS
ADTLDGGTRTSGPIFDFPSPPLDHLHEETGEADRFTDLGTPKPFRKLDSLVVGDTQSEDE
HHEIDKEQDPPNWQQLVSKEILQKLKPHEIKQQEVIHELFYTERAHVQKLGVLDQVFHQR
VIRENLLTPAETRNVFSNLEEILQLHVALNEQMKAVKKRYETSVVEQIGDDVLNWFSGAE
EEKLKQAVATFCSNQPFALEMIKSRQKKDLKFLTFVQDAESNPLCKRLQLKDIIPTEMQR
LTKYPLLLDNIARYSDREDEKEKVNRAANHCRNILDYVNQAVKEAENKQRLEDYQRRLDL
SYLKPGEYPMIDELRNLDLTKRKLIHEGPLTWKVNRDKSIDLYSLLLEDILVLLQRQDDK
LILRCHSKILASTSDSKHIFSPVIKLNTVLVRQVATDNKAFFVISMSKNGAQIYELIANS
VSEKNGWQDLITKMAATSKTEYPQPTQLQQTAPEMVSEEEHEDVEQQKVSHDQQEDRLIY
RHSTDKDSDTESLVQSKSPSSPSPSSCLSSTEHHLAVNALRNLGLLKQLLVQQLKLLQKE
EAENFQRFCSRKTKEQMRESEKLTKFSSLDKQNWGSRESDLNKELHAQQRATDRRSEHSN
TGPDCVAEVLEEGGEQYFDAQEPQIDMNVDGSKREKNIEEAQFRLSENYLILDGYENVQE
SSTDDDLSASQYPTQCPAVSDPADPLHVEERLTFSALDPTPSSEAFNHMLQYIANIESDL
QQLRGLEEFYNTYRNRVATSGVLEEDPDKAMLPTDKG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaacacagtctgcagcttccgacaggtttcactccagaaaaccaaccaggcac
ggaagcatactttatagagagtcttctacagacaaaaagcagaaagttgaaaggagtgtt
agctcatcccatgactttgatgccacaggtttagttcagcgctgtgtggttatccaacgt
gatgaaaatggctttggcctgacagtcagtggcgataaccctgtctttgttcagtctgtc
aaagaagatggcgctgccatgcgagctggagttcagactggggatcggatcatcaaggtt
aatggcactttggtcacacactccaatcatatagaagtggtcaaactcataaagtctggc
tcctatgtggctcttacagtacaaggtcgtccacctgggtcacccaccatccctttaact
gattctgaggcagatgtgcacaatttaggtcccataatgcctcctcattctccagtaacc
caaggccatggaaaaggtattacaagccctatacttatggaggaggaaaataacattgtg
catactcagaaactggacatattgaagaagatgctccagaaagaacaagaccagctacaa
caatttcaagaagagtataactctactccatcaccaaggctttctaaggagatccaagac
agcaaaaaacacatagcccagttgcaggagcgattgttgaaagccagaggtctttcacag
ggttctgaatcactgcagatcagtgagcttgatgcagactctagcgacatactgggacgc
acagattacagcagtggggatggatcacgaccaaacagtgacattgcagatagcccccgt
agtggacagcgagagaaaagcttcctggaagaaagtcctgagaaaagtgagattcaggac
acggactcacagtcaagtatgggaagcccctctattcgcttcactcataatattattggt
gcagaggatgatgactttgatgccgaaccagagcagcagatgaatgggcagtgtagctgt
ttccagagcatggacctgttaaaatcacacccagctcacctagcagtatttatacatcat
gtggtctcccaatttgatccagcagccatgctgtgctacctctatacagacttgtaccag
caaacaaattctaaagagactcgcagggtgtttctggagttcaaccaattcttcttagaa
aaagccgggaatcttagagtttctgtcccagatgatgttgctcttgaattagagaaaagg
agaccagagctgattccagaggagctacatcgacaatacatccagactatgcaagaaagg
ctctctgaggatgttaaaaaaaacttggaggattttaagcaaaagcgcagcatgggactg
accttggcagagggagagctctccaaactggatgcagatcgattgagagaccgcaataca
atggagaaggaaagagtctgtgcagagcagattcttcagaagattgatgaaattctgttt
tcatcacagactcctgaagatgaaaagagcaataccatacaatatgtgattctaacctat
atgaagcatcttggtgtgaaagttaaagagccacgaagtcttgaacagaaacgtggtcga
attggattcctcccaaaaattaagcaaagtatgaagaaagatcgggagggtgaggaaaag
gtgaagcgaagagggtttcccagcatccttgcacctcagaggaagcctagccgacaagat
agtaatgcaattggcagggctatggaacttcagcggccacgccaccccaagcacttatcc
acatcttcatccagtagccctgaaccagcagatggaagtagattgcgcactagcggtggc
tccattgagggttctgacacaccgttctctccatcatctaatttgggtgcagcatacacc
tttcaggaagttggcagagaagtggaaggaaattttaggtgtggtgaaaatatgtcatca
gctgatacccttgatggtggtactcgcacatctggcccaatatttgactttccatcgcca
ccacttgaccacctacatgaagagacaggtgaagcagacaggtttactgacctgggaaca
ccaaaacctttcagaaagttggatagcctggttgtaggtgacactcagagtgaggatgag
caccatgagattgacaaggaacaagatccacccaactggcagcagcttgttagtaaggaa
atactgcagaaacttaaaccgcacgagatcaagcaacaggaagtcatacacgagctgttt
tacactgaaagggcacatgtacagaaactgggtgttttggaccaagtgtttcatcagcgc
gtgatccgtgagaatctcttaacacctgcagagacccgaaatgttttctccaacttagaa
gaaatcttacagcttcatgtggcacttaatgagcaaatgaaagcagtaaagaagcgttat
gaaacatctgtggtggaacaaattggagatgatgttctgaactggttcagtggagcggaa
gaggagaagctaaagcaggcagtggccacattttgcagtaaccagccctttgcgttggag
atgataaaatctcgccaaaagaaagatctaaaattcctaacctttgtacaggatgcagag
agtaatcctctgtgtaagcgcctgcagttgaaggatattattcccactgagatgcagaga
ctaaccaagtatccactgctgctggataacattgccagatattcagatcgagaagatgag
aaagaaaaggtgaacagagcagcaaaccactgccgtaacatcttggactacgtaaatcag
gcagttaaagaggcagaaaacaagcagagacttgaagattatcaacgcaggctggacctg
tcctatttgaagccaggagagtatcccatgatagacgaactgagaaatctagatttgacc
aagagaaaattgatacatgaggggcctctgacatggaaggttaatagagacaaatcaatc
gatctttactctctgctgctagaggacattttggttttacttcagagacaagatgacaag
ttgattttgaggtgtcacagcaagattctggcttcgacttcagacagcaaacatatcttc
agccctgttatcaaactcaacaccgtgttagtacggcaggtggcaacagataacaaggca
ttctttgttatatccatgtcaaaaaatggggcacagatttacgagctcattgccaactct
gtttccgagaaaaatgggtggcaagacctcataacaaaaatggctgcaacatcgaagact
gaatatcctcaacctactcagttacaacagactgccccagagatggtcagcgaagaagaa
catgaagatgtggagcaacagaaagtgtcacatgatcaacaagaagatagacttatctat
aggcacagtacagacaaagactcagacaccgaaagtttagttcaatcgaaatcccccagc
agccccagtccctcctcctgtctttcatctacagagcatcacctggcagtgaacgcgctc
agaaacttgggactgctaaaacagttactggtgcagcagctgaagctccttcagaaagag
gaagccgagaactttcaacgattttgcagccgtaaaacaaaggagcagatgagggagagt
gaaaaacttactaagttttcaagcttggataagcagaactggggaagcagggagtccgat
ttgaacaaagaactgcatgctcagcaaagggccacagacagacgttctgaacatagcaac
actggcccagactgtgttgctgaggtattggaagagggtggggaacagtattttgatgct
caggaaccacagattgatatgaatgtagatggctctaagagagagaagaacattgaagag
gcacagttcagattatcagaaaattacctgattctggatggctatgagaacgtgcaggag
agctccacagatgatgatctctcagcctcacagtaccccacccagtgccctgctgttagt
gatccagccgatcctttgcatgtggaagagagactgactttcagtgccctcgatcctaca
ccatcttctgaggcttttaaccacatgcttcagtacatcgcaaacattgaatcagacttg
cagcagcttagggggcttgaagagttttataacacatatcgaaacagagtggctacttca
ggggtcttggaggaagatccagataaggcaatgcttcctacagataagggttaa
DBGET
integrated database retrieval system
