Xenopus tropicalis (tropical clawed frog): 780039
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Entry
780039 CDS
T01011
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
780039 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
780039 (ddx6)
03036 Chromosome and associated proteins [BR:
xtr03036
]
780039 (ddx6)
Enzymes [BR:
xtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
780039 (ddx6)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
780039 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
780039 (ddx6)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
780039 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
780039
NCBI-ProteinID:
NP_001072584
Xenbase:
XB-GENE-922227
UniProt:
Q0IHV9
LinkDB
All DBs
Position
7:complement(80831787..80856743)
Genome browser
AA seq
481 aa
AA seq
DB search
MSTARTENPVLMGMSSQNGQLRGPLKPSAGPGGGGTQTQQINQLKNASTINSGSQQQAQS
MSSVIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQ
MIVLDEADKLLSQDFVQIMEDIIITLPKNRQILLYSATFPLSVQKFMTSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEDK
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccagaaccgagaaccctgttttaatgggtatgtccagccagaatgggcag
ctaagaggcccattgaaacccagtgcagggcctggaggtggggggacacagacacaacaa
ataaaccagctgaaaaatgccagcacaatcaacagtggcagtcagcagcaagcacagagc
atgagcagcgttataaaacctggtgatgactggaagaagacattaaaactccctccaaaa
gaccttagaatcaagacttcggatgtcacctccacaaaaggaaatgaatttgaagattac
tgtttaaaaagagagctgctcatggggatatttgaaatgggatgggagaaaccatctcca
atacaggaggagagcattcccattgcattgtccggtagggatatcttggctagagcaaaa
aatggaactggcaagagtggagcctacctcattcccttacttgaacggctagacctaaag
aaggactgtatacaagcaatggtgattgttcctactcgagaactggcactacaggtcagt
cagatttgcatccaggtcagcaagcacatgggcggggtcaaagtcatggcgacaacaggg
ggcacaaatctgagagatgatataatgaggcttgatgatacagtacatgtagtaatagca
actcctggcaggattctggatctcattaaaaaaggtgtggctaaagtagaccatatccag
atgatcgtgttggatgaggcagacaaactactgtctcaggattttgtgcaaataatggag
gatataattatcacgctacctaaaaacagacagattctactttactcagccacatttccc
ctcagtgttcagaagtttatgacttcccatttgcaaaaaccctatgagattaacctgatg
gaggaattaacgctgaagggagtaacgcaatattatgcctatgtgactgaacggcagaaa
gttcactgcctcaacacactgttctctaggctccaaatcaaccagtcaataattttctgc
aactcctcccaacgggttgaactcctggctaagaaaatatctcagttgggctattcgtgt
ttctatatccatgcaaagatgagacaagagcacaggaatcgtgttttccatgatttcaga
aatggtttgtgccgaaatcttgtttgcactgatctgtttacccgtggtattgatatccaa
gctgtgaatgtggtgataaactttgactttccaaagctggcggagacatacttgcatcgc
ataggaagatcaggtcgctttggccaccttgggcttgccataaacttgatcacttatgat
gaccgattcaaccttaaaagtattgaagaacagctgggaactgaaatcaaacccataccc
agcagcatagacaagagcttatatgtggcagaatatcacagtgaatctggagaagacaaa
ccttaa
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