KEGG   Xenopus tropicalis (tropical clawed frog): 780176
Entry
780176            CDS       T01011                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:xtr01009]
    780176 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xtr03036]
    780176 (kdm5c)
Enzymes [BR:xtr01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     780176 (kdm5c)
Protein phosphatases and associated proteins [BR:xtr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     780176 (kdm5c)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    780176 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD
Other DBs
NCBI-GeneID: 780176
NCBI-ProteinID: NP_001072719
Xenbase: XB-GENE-1033025
UniProt: A0JM02
LinkDB
Position
8:complement(26089383..26113230)
AA seq 1506 aa
MLNMETEDFVPPAECPVFEPTWEEFKDPLGYIAKIRPIAEKSGICKIRPPVDWQPPFAVE
VDNFHFTPRIQRLNELEAETRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLNKIV
QEEGGYEPICRERRWARVAQRMGYPSGKNLGSLLRSHYERIIYPFHMYQSGANMVDYRER
PRYDNEEKDKEYKPHSIPLRQSVQPSKITSYGRRAKRLTQEDPENSDPAAQSSSQPTETS
PSWPEPTVEDIEKNPELKKLQIYGAGPKMMGLGLMAKNKNLRKKDSDIPECPPTLVIKEE
VPVEGRGEPGEVQVHVKQERSLSPEPCTKMTMRLRRNTITNSNQFVDSYICRICSRGDDD
DRLLLCDGCDDNYHTFCLLPPLPEPPKGIWHCPKCVMAECKRPPEAFGFEQATREFTLQS
FGEMADAFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVQYGADIHSKEFGSGFPML
DGKTELSPEEKAYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIE
DHWSYSINYLHWGEPKTWYGVPSSAAEQLEDVMKKLTPELFESQPDLLHQLVTLMNPNTL
MAHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRKCIEHYRRL
RRYCVFSHEELICKMAACPERLDMSLAAAVHKEMFLLVQEERRLRKTLLEQGVTEAEREA
FELLPDDERQCQKCKTTCFLSALACYDCPQGLVCLYHIEDLCQCPPSRQYLRYRYTLDEL
PAMLHKLKGRAESFDTWSNKVRLAIELDGKTKKELVELKTLEAEAFEKKFVENEHLQLLR
GSIQEVESCIAEAKKVLGFSQANRSHSTVISLEGLIKLVKRIQSVPCVVPQLSQLQCLQE
EAETLQEEAQKSLLTLSNSTSQLREVLERCQALTVEVPAVRQIERHLRQGEWLERVRTAL
SSGRSGTLQEMRSLLKEAEEVAESPAVEKARSELQELISIALRWEEKAQMCLEARKKHPP
AMLEAIIKEAEHIPVQLPNTLSLKEALCKARAWSADVEEIQSGDHYPCLDDLEGLVAVGR
DLPVKMEELHQLEVQVAAAHSWREKASKTFLKKNSCYTLLEVLCPSADVCSDTGKRSRWK
KEKEQGLYRSDIESLGLSAQDLRDPGCIVLAFKEGEQKEKAGILRLRAMNSSLERGCVCV
CGEPPDELMLRCELCQDLFHGLCVPSPRLSNHRGAHTMPSLIWWEWDSRFLCSLCVRSRR
PRLQTILSLLVALQKLPVRLPEGEALQCLTERAMSWQDRARRVLATPEISSAATALAERR
QKMQQHCKDPQALRETTRNEQNPVPQENGDCHTENGTCAMPDLDAMAALLPRLEKTAILE
LSLGSRALLEDLMLEGDLLEVSLEEEASIWRLLLASQVPCIERLRTLIEIERCERRLARQ
KGKDPEKRKKRRSERGDGYSPPILPKEELGPKRCRSDIRAQETLSDKESPRKGGSECSQN
GGEKRL
NT seq 4521 nt   +upstreamnt  +downstreamnt
atgttgaatatggagaccgaagactttgtgcctcccgccgagtgccctgttttcgaacca
acctgggaagagtttaaggatcccttaggatatattgctaaaatcaggcctattgctgaa
aaatctggaatatgcaaaatccgcccgcctgtggactggcagccaccatttgccgtggaa
gtagacaactttcacttcactccacgtattcagaggctcaatgaacttgaagcagagact
agagtcaagctaaactacttggaccaaatcgccaagttttgggagatccagggatcctct
ttaaaaattccgaatgtggagcgcagaatcctggatctgtacagtctgaacaagattgtc
caggaagagggtggctatgagccaatatgcagagaacgaaggtgggcgcgtgtggcacaa
cgcatgggatacccctcaggaaagaaccttggttcactgttacgctcccattacgagcgc
atcatctatccctttcatatgtaccagtcgggcgcaaacatggtggactacagagagagg
ccacgctatgacaatgaagagaaagataaggaatacaagccacacagtatccctctgcgc
cagtccgtccaaccctccaaaattaccagctatggacggcgagccaagcgcctaactcag
gaggatcctgagaactcagatcctgccgcccagagctcctctcagcccactgaaacatct
ccatcctggccggagccaactgttgaggatatagagaagaatccagagctgaaaaagctc
cagatatatggtgcaggccccaagatgatgggattaggacttatggccaaaaataagaac
ttgcgcaagaaagacagcgatatcccagaatgccctccgacactggtgattaaggaagag
gttccggtggaagggcgtggagagccaggggaagttcaggtgcatgtgaaacaggagcgc
tccctcagcccagagccatgcacaaagatgactatgaggctacgcaggaacaccatcacc
aacagcaatcaatttgtggactcctacatttgccgcatttgctcccgcggcgatgatgac
gaccgcttgttgctgtgtgatggatgtgacgacaactaccacaccttctgcttacttcca
cctctccctgaaccaccgaagggtatctggcattgccctaaatgtgtcatggcagaatgc
aagcggccccctgaagcattcgggtttgagcaggccacgcgagagtttacactacaaagc
tttggcgagatggctgatgcatttaaagctgattacttcaacatgcctgtacatatggtc
cccacggagctagtggagaaggagttctggcgcctggttaacagcatagaggaggatgtc
acagtacaatatggagcagacattcactccaaggagtttggcagtggcttccccatgttg
gatggaaaaacagaactctcccctgaggaaaaggcgtatgccaccagcggctggaatttg
aatgtgatgccagtactggagcagtctgtgctatgtcacataaacgctgacatctctggc
atgaaggtgccctggctttatgtgggaatggtcttctctgccttctgctggcacattgag
gatcactggagttactccatcaactatcttcattggggggaaccaaagacctggtatggg
gtgccttcctcagcagctgaacagcttgaagatgtgatgaagaagttgactccggagctt
tttgaaagccagcctgacctcctgcatcagctggtcactctcatgaaccccaacacactc
atggcacatggcgtgccggttgtgcgcaccaatcaatgtgcaggggagtttgtcatcaca
ttcccaagagcctatcatagcggcttcaatcaaggctacaactttgcagaggcagtcaac
ttctgcactgctgactggctcccggccggcaggaagtgcattgagcattacaggaggttg
cgtagatactgtgtcttctctcatgaagagctgatctgcaagatggcggcttgccccgag
aggttggacatgagcctggcagctgctgtacacaaagaaatgttcctgttggtgcaggaa
gaaaggcggctgcgcaaaacactgttggaacagggcgttactgaggcagaaagggaagct
tttgagctacttcctgatgatgaacgacagtgccagaagtgcaagaccacttgcttcctc
tccgctttggcatgttatgactgccctcagggcttggtgtgcttgtaccatattgaggac
ttgtgccagtgcccaccatctcgtcagtatctcaggtatcgctacaccctggatgagctt
ccggccatgttacataagctcaaaggtcgggcagagtcctttgacacctggtctaataaa
gtgcgcctggctatagaattagatgggaaaactaagaaagaactggtggagctgaagact
ctggaagcggaggcttttgagaagaaatttgtagagaatgagcatctgcagctactgagg
ggctccatccaagaagttgaaagctgcattgccgaagcaaagaaagtgctgggcttctcc
caagccaataggagtcattctacagtgatctctctggagggtttgatcaaacttgttaag
cgtattcagtcagtcccttgtgtggtcccacagctttctcagcttcagtgtctgcaggaa
gaggcggagaccttgcaggaagaggcacagaaatccttgctgactctctcgaatagcacc
tctcagctgcgggaggtactggagcgctgccaggctctgacggtggaagtgccagcggtc
aggcaaatagagagacatttgcggcagggtgagtggttggagcgagtacgcacagcgttg
agttcgggacggtcgggcacacttcaggagatgcgctcgctcttaaaggaggcagaagaa
gtggctgagagcccagcagtagaaaaggcacggagtgaactgcaggagcttatctctatt
gctctgcgctgggaggagaaggcccagatgtgtttggaggcaaggaaaaagcatccccct
gccatgttagaggccatcataaaggaagctgagcatattccagtgcagttacccaacacc
ctgagcctgaaggaggctctctgcaaggccagggcttggagtgctgatgtggaggagata
cagagcggcgatcactacccatgcctggacgatttggagggtttggttgccgtgggccgg
gatctcccggtgaaaatggaagaacttcatcagctagaggtgcaagtggcggctgcgcat
tcctggagggagaaagcatcgaaaacgttcctcaaaaagaattcctgctacaccctcctt
gaggtgctgtgcccaagtgcagatgtttgctcagacactggaaagcggtctcggtggaag
aaagagaaggagcagggcttgtacaggtcagacattgagagccttgggctgtctgcacag
gacctgcgggaccctggttgtatagtgctggcatttaaggaaggagagcaaaaagagaag
gctggaatccttaggttacgcgccatgaattcttccctggaaagaggctgtgtatgtgtt
tgtggggagccgccagacgagctcatgctcagatgtgagctgtgtcaagacttattccat
gggctgtgtgtgcccagcccccggctctcaaatcaccgtggtgcacacactatgccatct
cttatttggtgggaatgggacagccgtttcttgtgctcactgtgtgtgcgctcgcggagg
cctcggctgcagaccattctctctctgttggtcgccctccagaaactgccagtgcgactg
ccagagggcgaggctttacagtgtttaacagagcgagccatgagctggcaggatcgcgct
cgcagggtgctagccacgccggaaatttcttctgccgcaacagcacttgcagagcgcagg
caaaaaatgcagcagcattgtaaagatccccaggcactgagagagacaacccggaatgaa
cagaacccagtcccacaagagaatggtgactgtcacactgagaatggcacttgcgcgatg
ccagatctagatgccatggctgccctgctccctcgtttagaaaagacagcgattctagag
ttgtcgctaggctctcgagcgctactggaagacttgatgttggagggggaccttctagag
gtgtcgctggaagaagaagcgagcatttggcgattgttactggcatctcaggtgccctgt
atagagagactgcgcactttgatagagattgaaaggtgtgagcgtaggctggctcggcaa
aaaggcaaagacccagagaagaggaagaagaggaggagcgagcggggtgatggctactct
ccccccattctcccaaaggaggagctgggtccaaagaggtgccgcagtgacatccgagcg
caggagaccctctctgataaggagagccccaggaaaggagggagtgaatgcagccagaat
ggaggagagaagcgcttgtga

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